Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GWK37_RS06430 Genome accession   NZ_CP048002
Coordinates   1273700..1274389 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CACC 316     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268700..1279389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK37_RS06395 (GWK37_06400) - 1268898..1269380 (-) 483 WP_022553865.1 flagellar protein FlgN -
  GWK37_RS06400 (GWK37_06405) flgM 1269395..1269661 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GWK37_RS06405 (GWK37_06410) - 1269731..1270150 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  GWK37_RS06410 (GWK37_06415) comFC 1270224..1270913 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  GWK37_RS06415 (GWK37_06420) - 1270919..1271203 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  GWK37_RS06420 (GWK37_06425) comFA 1271261..1272646 (-) 1386 WP_115941105.1 DEAD/DEAH box helicase Machinery gene
  GWK37_RS06425 (GWK37_06430) - 1272754..1273602 (-) 849 WP_003151387.1 DegV family protein -
  GWK37_RS06430 (GWK37_06435) degU 1273700..1274389 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GWK37_RS06435 (GWK37_06440) degS 1274466..1275629 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GWK37_RS06440 (GWK37_06445) - 1275852..1276499 (+) 648 WP_007614107.1 YigZ family protein -
  GWK37_RS06445 (GWK37_06450) - 1276504..1277718 (+) 1215 WP_014419013.1 LCP family protein -
  GWK37_RS06450 (GWK37_06455) - 1277817..1278893 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=419225 GWK37_RS06430 WP_003219701.1 1273700..1274389(-) (degU) [Bacillus velezensis strain CACC 316]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=419225 GWK37_RS06430 WP_003219701.1 1273700..1274389(-) (degU) [Bacillus velezensis strain CACC 316]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment