Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GWK37_RS06420 Genome accession   NZ_CP048002
Coordinates   1271261..1272646 (-) Length   461 a.a.
NCBI ID   WP_115941105.1    Uniprot ID   -
Organism   Bacillus velezensis strain CACC 316     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266261..1277646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK37_RS06385 (GWK37_06390) flgL 1266436..1267353 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  GWK37_RS06390 (GWK37_06395) flgK 1267365..1268882 (-) 1518 WP_115941104.1 flagellar hook-associated protein FlgK -
  GWK37_RS06395 (GWK37_06400) - 1268898..1269380 (-) 483 WP_022553865.1 flagellar protein FlgN -
  GWK37_RS06400 (GWK37_06405) flgM 1269395..1269661 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GWK37_RS06405 (GWK37_06410) - 1269731..1270150 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  GWK37_RS06410 (GWK37_06415) comFC 1270224..1270913 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  GWK37_RS06415 (GWK37_06420) - 1270919..1271203 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  GWK37_RS06420 (GWK37_06425) comFA 1271261..1272646 (-) 1386 WP_115941105.1 DEAD/DEAH box helicase Machinery gene
  GWK37_RS06425 (GWK37_06430) - 1272754..1273602 (-) 849 WP_003151387.1 DegV family protein -
  GWK37_RS06430 (GWK37_06435) degU 1273700..1274389 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GWK37_RS06435 (GWK37_06440) degS 1274466..1275629 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GWK37_RS06440 (GWK37_06445) - 1275852..1276499 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52675.19 Da        Isoelectric Point: 10.2284

>NTDB_id=419224 GWK37_RS06420 WP_115941105.1 1271261..1272646(-) (comFA) [Bacillus velezensis strain CACC 316]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSVKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEEKGCLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=419224 GWK37_RS06420 WP_115941105.1 1271261..1272646(-) (comFA) [Bacillus velezensis strain CACC 316]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGTCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAAGAAAAAGGCTGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGTAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCAGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTAGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACTAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGCTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment