Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   IBB97_RS07210 Genome accession   NZ_CP061021
Coordinates   1387411..1389381 (-) Length   656 a.a.
NCBI ID   WP_207563400.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24739     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1382411..1394381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB97_RS07190 (IBB97_07200) - 1382913..1383842 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  IBB97_RS07195 (IBB97_07205) amiE 1383835..1384920 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  IBB97_RS07200 (IBB97_07210) amiD 1384930..1385856 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  IBB97_RS07205 (IBB97_07215) amiC 1385856..1387349 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  IBB97_RS07210 (IBB97_07220) amiA3 1387411..1389381 (-) 1971 WP_207563400.1 peptide ABC transporter substrate-binding protein Regulator
  IBB97_RS07215 (IBB97_07225) - 1389737..1390914 (+) 1178 Protein_1381 ISL3 family transposase -
  IBB97_RS07220 (IBB97_07230) amiA3 1390959..1392932 (-) 1974 WP_138496747.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72324.68 Da        Isoelectric Point: 6.0142

>NTDB_id=419187 IBB97_RS07210 WP_207563400.1 1387411..1389381(-) (amiA3) [Streptococcus thermophilus strain 24739]
MKLKKILGITGVALLSVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKNIKIIFFTQHHKCVYISYCINIDRQSYKYTAKK
TDSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVN
LADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVNQSSKLNVAQVQSLKQTIEKSLGSENVVIDINQLSSDDLE
NATLNAANAAAEDWDISNGVGWGPDYQDPSTYLDILKTTSSENTKIFNGYDDPNNAAAAQVGLKNYDALLDSAASETTDI
NARYDRYAQAQAWLEDSSLIIPLTVSNGAAPVISRLTPFTGASIQVGDKGSSYVKYVKSQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=419187 IBB97_RS07210 WP_207563400.1 1387411..1389381(-) (amiA3) [Streptococcus thermophilus strain 24739]
ATGAAACTTAAAAAAATTCTTGGAATTACGGGTGTAGCCCTTCTAAGTGTAGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAAAATATAAAGATAATATTTT
TTACACAGCACCATAAGTGCGTCTACATCAGCTATTGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAG
ACGGATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCG
TAAGGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTG
TGAGTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAAT
CTTGCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGC
AGATGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTAACCAAAGCTCTAAACTTAATGTTGCCCAAGTCCAATCTT
TGAAACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAA
AATGCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCTAACGGTGTGGGTTGGGGTCCAGACTATCA
AGATCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAAATACCAAGATTTTCAATGGTTATGATGATCCAA
ACAATGCAGCAGCAGCCCAAGTAGGTCTTAAGAATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACATC
AACGCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTATCATTCCATTGACTGTTAGTAA
CGGTGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATACAGGTGGGTGATAAGGGCTCATCCTACG
TCAAATATGTGAAATCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

93.465

100

0.937
  amiA3 Streptococcus thermophilus LMG 18311

92.249

100

0.925
  amiA Streptococcus salivarius strain HSISS4

87.062

100

0.872