Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GSS61_RS03130 Genome accession   NZ_CP047985
Coordinates   681140..683323 (+) Length   727 a.a.
NCBI ID   WP_273693003.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain HZ-52     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 676140..688323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS61_RS03100 (GSS61_03290) - 676353..676922 (-) 570 WP_062851292.1 PilZ domain-containing protein -
  GSS61_RS03105 (GSS61_03295) lolC 677187..678395 (+) 1209 WP_062851293.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GSS61_RS03110 (GSS61_03300) lolD 678388..679095 (+) 708 WP_005481886.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GSS61_RS03115 (GSS61_03305) lolE 679098..680342 (+) 1245 WP_062851294.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GSS61_RS03120 (GSS61_03310) - 680547..681056 (-) 510 WP_005456245.1 DUF2062 domain-containing protein -
  GSS61_RS03125 - 681028..681195 (+) 168 WP_229644678.1 hypothetical protein -
  GSS61_RS03130 (GSS61_03315) comEC 681140..683323 (+) 2184 WP_273693003.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GSS61_RS03135 (GSS61_03320) msbA 683355..685103 (+) 1749 WP_025610353.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GSS61_RS03140 (GSS61_03325) lpxK 685109..686116 (+) 1008 WP_047732974.1 tetraacyldisaccharide 4'-kinase -
  GSS61_RS03145 (GSS61_03330) - 686097..686276 (+) 180 WP_005378451.1 Trm112 family protein -
  GSS61_RS03150 (GSS61_03335) kdsB 686276..687031 (+) 756 WP_062851296.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 81794.81 Da        Isoelectric Point: 9.4376

>NTDB_id=419035 GSS61_RS03130 WP_273693003.1 681140..683323(+) (comEC) [Vibrio parahaemolyticus strain HZ-52]
MPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGENSTIIGRVDSSFTQISHGYEGVIAI
KQVNSHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSMGSGVVARAVVTKDSHWVIRTSSSWR
ESIIQTVERDISRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHIGMALTFGLALGGLIRLAMPRYWFLP
SVSGLAFAIVYAWLADFSLPTTRAVSVCIIYIALKYWLVHWSPWRVLLLAVALQLFFQPFASFSLSFWLSYLSVGAVLFA
VNTVQDSKEGRLGKLRILLLTQLMLSLLIVPISGYFFSGFSWSSLVYNLVFIPWFGFVVVPIMFAALIASLLFPMLATVL
WCLLDVFLVPLSWSVRYAIGTWQPISTEWTFVIAVVSAVLVLRHVMPRYVWMFVCVIVVVTGLFPKQYSQTWRIDVLDVG
HGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVITPVLHRRGYSSVDTMILSHADNDHAGGRKVIEQYFSPKHKLSSQSFLH
YQPCIAAEKWKWQGLNMEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIEAISEWILLREPEKLRSDVMLVPHHG
SKTSSNPKFINVVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQITILLDGNNWRFESKRLETIEPWYRQ
MLRNRVE

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=419035 GSS61_RS03130 WP_273693003.1 681140..683323(+) (comEC) [Vibrio parahaemolyticus strain HZ-52]
ATGCCGGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCAT
AGGCGTAATTGTGGGCTTTATGGTTGTCATCGTTCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAG
GTGAGAATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCATAGCGATA
AAACAAGTGAATTCTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAA
CAGTGAGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAGT
CAATGGGAAGTGGTGTTGTTGCTAGAGCGGTCGTAACTAAAGATTCACACTGGGTCATTCGTACTTCTTCGTCTTGGCGC
GAGTCGATAATTCAAACTGTTGAGCGTGATATTTCTCGCCTTGAGCACTTTGCTCTAATCAAAGCACTGGCTTTTGCTGA
TCGCACTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGATTACTGCATCTTGTATCGATTTCTGGTTTAC
ACATTGGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTACCA
TCAGTGAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGT
TTGTATCATCTATATTGCTTTGAAGTATTGGCTTGTTCATTGGAGCCCATGGCGCGTACTGTTACTGGCCGTGGCGTTGC
AACTTTTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCG
GTTAACACAGTGCAAGACTCGAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATGCTGAGCTT
ATTGATTGTCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTT
GGTTTGGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATTGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTA
TGGTGCTTGCTTGACGTGTTCCTTGTACCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTAC
CGAGTGGACATTTGTTATTGCTGTAGTGAGTGCCGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTG
TCTGTGTAATTGTTGTGGTGACAGGGTTGTTTCCTAAGCAATATAGCCAAACTTGGCGTATTGATGTACTTGATGTCGGG
CATGGGTTGGCGGTGCTGGTCGAAAAAGAGGGGAGAGTTTTACTCTATGATACGGGCAAGGCTTGGCAAAACGGCAGTAT
AGCTGAGCAAGTGATTACGCCAGTACTGCACCGCAGAGGTTACTCAAGTGTCGATACGATGATTTTAAGTCATGCCGATA
ATGACCATGCTGGCGGCCGAAAAGTGATAGAGCAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACAT
TATCAGCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAACCTGTTGT
ACGTGCATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATA
TCGAAGCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGCTAGTGCCACATCATGGA
AGCAAAACCTCTTCTAACCCTAAGTTTATCAATGTTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCA
GTGGGGAATGCCCGCACCTGAAGTCGTTCAGGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCC
AAATAACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCTTGAGACAATTGAGCCTTGGTATAGGCAG
ATGCTGCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(479-653)

Competence protein (Competence)

(183-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.349

100

0.983
  comEC Vibrio campbellii strain DS40M4

65.75

100

0.658
  comEC Vibrio cholerae strain A1552

41.071

100

0.411

Multiple sequence alignment