Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   GYY_RS00230 Genome accession   NC_015847
Coordinates   50655..51713 (-) Length   352 a.a.
NCBI ID   WP_013998533.1    Uniprot ID   G0H0W7
Organism   Methanococcus maripaludis X1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45655..56713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYY_RS00205 (GYY_00175) mptA 46546..47493 (+) 948 WP_011169978.1 GTP cyclohydrolase MptA -
  GYY_RS00210 (GYY_00180) - 47519..48568 (+) 1050 WP_013998529.1 ATP-grasp domain-containing protein -
  GYY_RS00215 (GYY_00185) tfe 48572..49129 (+) 558 WP_013998530.1 transcription factor E -
  GYY_RS00220 (GYY_00190) - 49140..49727 (+) 588 WP_013998531.1 HDIG domain-containing metalloprotein -
  GYY_RS00225 (GYY_00195) epdJ 49754..50650 (-) 897 WP_013998532.1 type II secretion system F family protein Machinery gene
  GYY_RS00230 (GYY_00200) epdK 50655..51713 (-) 1059 WP_013998533.1 type II secretion system F family protein Machinery gene
  GYY_RS00235 (GYY_00205) epdL 51725..53374 (-) 1650 WP_013998534.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  GYY_RS00240 (GYY_00210) - 53384..54403 (-) 1020 WP_013998535.1 transcription initiation factor IIB -
  GYY_RS00245 (GYY_00215) - 54422..54703 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -
  GYY_RS00250 (GYY_00220) fni 55206..56273 (+) 1068 WP_011169987.1 type 2 isopentenyl-diphosphate Delta-isomerase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39789.67 Da        Isoelectric Point: 9.7599

>NTDB_id=41900 GYY_RS00230 WP_013998533.1 50655..51713(-) (epdK) [Methanococcus maripaludis X1]
MKRKTEKKQGTFDKLANTLKGVKTPKKRKISRVGRSEYLKKIFERKTEDIHKDEILEFYEPYIDETPEVSIDLDDLLFEK
KEFGALGGYSRSFSYWVTNTSFLPSKRDYQYAGIVDERVYFLKMMIAAITTVVLFIIYGVLTGDVFSGVSNGVLLAVIIV
VGSIFYPKLKLTLFRGEIKIQVLMSILHLISMLNSGASVQESLKNIANNPEYGITSFEFRSIIKDINQGGYNFVEALERA
KMRTKIHIMRQLYDQLILAANKGGTQLLLENLYNEIVRESMSKIDSSKFQISNLGNLIFGIGLIIPFSGMIQSALGAQQG
FDGIINAIDLVMGKIGLMSTIIFTIFIKMKIE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=41900 GYY_RS00230 WP_013998533.1 50655..51713(-) (epdK) [Methanococcus maripaludis X1]
ATGAAAAGAAAAACTGAAAAAAAACAGGGTACTTTTGATAAACTCGCTAATACATTAAAAGGAGTTAAAACTCCGAAAAA
AAGAAAAATATCTAGGGTTGGAAGATCGGAATATTTAAAAAAAATCTTCGAAAGAAAAACTGAAGATATACATAAAGATG
AGATTTTAGAGTTTTACGAACCATATATCGATGAAACTCCCGAAGTAAGTATTGACTTAGATGATTTACTTTTTGAAAAA
AAAGAATTTGGAGCACTTGGCGGATACTCCAGATCTTTTTCATACTGGGTTACAAACACCTCATTTTTACCATCTAAGAG
GGATTACCAGTATGCAGGTATTGTAGATGAGCGAGTTTATTTCTTAAAGATGATGATTGCAGCAATCACCACGGTTGTTT
TGTTCATAATTTACGGTGTTTTGACCGGCGATGTATTTTCTGGCGTTTCTAATGGGGTACTTTTAGCAGTTATTATAGTT
GTTGGTAGTATATTTTATCCAAAACTAAAATTAACATTGTTTAGGGGGGAAATTAAAATTCAGGTGTTAATGAGTATATT
ACACCTTATTTCAATGTTAAACTCTGGTGCTTCTGTTCAGGAATCCCTGAAAAATATTGCAAACAATCCAGAATATGGAA
TTACCTCTTTTGAATTTAGGAGTATTATAAAAGATATTAATCAGGGTGGGTATAACTTCGTAGAAGCTCTCGAAAGAGCT
AAAATGAGGACTAAAATACATATAATGAGACAGCTTTACGACCAGTTGATTCTTGCAGCAAATAAGGGTGGAACGCAGCT
TTTACTTGAAAATTTGTATAATGAAATTGTAAGAGAATCCATGTCAAAAATAGACAGTTCAAAATTCCAAATATCAAATT
TGGGAAATCTTATATTTGGTATTGGTTTGATTATCCCATTTTCAGGAATGATACAGTCAGCATTGGGTGCCCAGCAAGGA
TTTGACGGAATTATCAATGCTATTGACCTCGTAATGGGCAAAATAGGGTTAATGTCAACAATTATATTTACCATCTTTAT
TAAAATGAAGATTGAGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(187-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0H0W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanococcus maripaludis strain DSM 2067

100

100

1

Multiple sequence alignment