Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   GYY_RS00235 Genome accession   NC_015847
Coordinates   51725..53374 (-) Length   549 a.a.
NCBI ID   WP_013998534.1    Uniprot ID   G0H0W8
Organism   Methanococcus maripaludis X1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 46725..58374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYY_RS00210 (GYY_00180) - 47519..48568 (+) 1050 WP_013998529.1 ATP-grasp domain-containing protein -
  GYY_RS00215 (GYY_00185) tfe 48572..49129 (+) 558 WP_013998530.1 transcription factor E -
  GYY_RS00220 (GYY_00190) - 49140..49727 (+) 588 WP_013998531.1 HDIG domain-containing metalloprotein -
  GYY_RS00225 (GYY_00195) epdJ 49754..50650 (-) 897 WP_013998532.1 type II secretion system F family protein Machinery gene
  GYY_RS00230 (GYY_00200) epdK 50655..51713 (-) 1059 WP_013998533.1 type II secretion system F family protein Machinery gene
  GYY_RS00235 (GYY_00205) epdL 51725..53374 (-) 1650 WP_013998534.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  GYY_RS00240 (GYY_00210) - 53384..54403 (-) 1020 WP_013998535.1 transcription initiation factor IIB -
  GYY_RS00245 (GYY_00215) - 54422..54703 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -
  GYY_RS00250 (GYY_00220) fni 55206..56273 (+) 1068 WP_011169987.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  GYY_RS00255 (GYY_00225) - 56346..57692 (+) 1347 WP_011169988.1 RNase J family beta-CASP ribonuclease -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 61793.96 Da        Isoelectric Point: 5.7523

>NTDB_id=41901 GYY_RS00235 WP_013998534.1 51725..53374(-) (epdL) [Methanococcus maripaludis X1]
MGLFDRIQSRDSNPSVAKKNNVSEKVSETPNILDTSEKVKKPEIKVGFSVNERAKQPVEEFERDSTSSILDKYFVKVDDI
DFDVIIEKENGVTLYKIPEITLMNTALAKFSDMDIKTIKAELSESTLQKLGQIQGYLKNYSEKNNLHLRDIEILHLSHYF
YLIIGKLGLLEIPLNDSKLEEVMVNGVESPSFVFHRKYQMCETNIRLDRHEATRVVESIAYLAGRTIDSRTPMLDAFLPD
GSRVNATMSDVTLGGNTITIRKFSEDPLTIVDLINFGTFDLELAAFLWQAVEGYFGAKPANTLIVGGTGSGKTTTLNVVS
MFSMYTDRLVTIEDTPELQVPLTHLIKMITRPGRPGIQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAMNTGH
DGCSGTLHANSADEALIRLINPPMNVPKVMMSSVDFIINQQRIKRNKKTVRRILGVVEIGGSGENITKTELFKYDGISDS
VVKTGICMWEEDVCQIAGITRDELMDDRINRKKVLKYMVNNNINDIRKVGDVLKQYQENPENVLKNILE

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=41901 GYY_RS00235 WP_013998534.1 51725..53374(-) (epdL) [Methanococcus maripaludis X1]
ATGGGGCTTTTTGACAGAATCCAAAGCAGAGATTCCAATCCATCTGTCGCTAAAAAAAATAATGTATCTGAAAAAGTATC
TGAAACCCCCAATATACTTGATACTTCTGAAAAAGTCAAAAAACCCGAAATAAAAGTGGGTTTTTCAGTGAATGAACGGG
CAAAACAGCCAGTAGAAGAATTTGAAAGAGATTCTACAAGCTCAATACTCGATAAATACTTTGTAAAAGTTGATGACATT
GATTTTGATGTAATTATTGAAAAAGAAAATGGTGTCACACTATACAAGATTCCAGAAATCACCCTTATGAATACAGCTCT
TGCAAAATTTTCAGATATGGATATTAAAACAATAAAAGCGGAACTTTCAGAATCTACTCTTCAAAAATTAGGGCAGATTC
AAGGATACCTTAAAAATTATTCGGAAAAAAATAATTTACATTTAAGAGACATAGAAATACTCCATTTATCACACTATTTT
TACTTAATAATTGGAAAATTAGGGCTTTTAGAAATTCCATTAAATGATAGCAAATTAGAAGAAGTAATGGTAAATGGTGT
TGAATCACCTTCTTTCGTATTTCACAGAAAATACCAGATGTGTGAAACAAATATTAGGCTTGATAGACACGAAGCAACGA
GGGTTGTTGAAAGTATAGCTTATCTTGCAGGTAGAACTATTGATTCAAGAACTCCAATGCTTGATGCATTTTTACCAGAT
GGAAGCAGGGTTAACGCTACAATGAGTGATGTTACATTGGGTGGAAATACAATTACCATTCGTAAATTTAGTGAAGATCC
ATTAACTATTGTTGATTTGATTAATTTTGGAACTTTTGATCTAGAACTTGCAGCATTCCTCTGGCAGGCTGTTGAAGGGT
ACTTTGGTGCAAAACCTGCAAATACTCTTATTGTTGGGGGAACTGGTTCGGGTAAAACTACAACTTTAAACGTTGTTTCA
ATGTTTTCGATGTATACGGATAGACTTGTAACTATTGAAGATACTCCAGAGTTACAGGTTCCACTAACGCACCTGATAAA
AATGATTACAAGACCTGGAAGACCAGGTATTCAGGGTTATGAAATCACGATGGATGATTTGATCAAGAACTCCTTAAGGA
TGAGGCCTGACAGGATATTTGTAGGGGAAGTTAGGGGTAGTGAAGCCCATTCGTTACTTGTTGCTATGAACACCGGGCAC
GATGGATGTTCCGGAACTCTGCACGCAAACAGCGCAGATGAAGCACTCATTAGGTTAATAAACCCACCTATGAACGTTCC
AAAAGTTATGATGTCTTCAGTTGATTTTATTATAAACCAGCAGCGTATTAAACGTAATAAAAAAACTGTTAGAAGGATCC
TCGGTGTTGTTGAAATCGGGGGAAGTGGGGAAAATATTACAAAAACTGAGCTCTTTAAATACGATGGAATAAGCGACAGT
GTTGTAAAAACAGGAATTTGTATGTGGGAAGAAGACGTGTGCCAGATTGCGGGTATCACGAGAGATGAATTAATGGACGA
TAGAATCAATAGAAAGAAAGTACTAAAATATATGGTGAACAACAATATTAATGATATTAGAAAAGTAGGGGATGTACTTA
AGCAATATCAGGAAAATCCAGAAAATGTCTTAAAAAACATTCTGGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(176-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0H0W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

99.636

100

0.996

Multiple sequence alignment