Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   GYY_RS00225 Genome accession   NC_015847
Coordinates   49754..50650 (-) Length   298 a.a.
NCBI ID   WP_013998532.1    Uniprot ID   G0H0W6
Organism   Methanococcus maripaludis X1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 44754..55650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYY_RS00200 (GYY_00170) - 45299..46525 (+) 1227 WP_011169977.1 AAA family ATPase -
  GYY_RS00205 (GYY_00175) mptA 46546..47493 (+) 948 WP_011169978.1 GTP cyclohydrolase MptA -
  GYY_RS00210 (GYY_00180) - 47519..48568 (+) 1050 WP_013998529.1 ATP-grasp domain-containing protein -
  GYY_RS00215 (GYY_00185) tfe 48572..49129 (+) 558 WP_013998530.1 transcription factor E -
  GYY_RS00220 (GYY_00190) - 49140..49727 (+) 588 WP_013998531.1 HDIG domain-containing metalloprotein -
  GYY_RS00225 (GYY_00195) epdJ 49754..50650 (-) 897 WP_013998532.1 type II secretion system F family protein Machinery gene
  GYY_RS00230 (GYY_00200) epdK 50655..51713 (-) 1059 WP_013998533.1 type II secretion system F family protein Machinery gene
  GYY_RS00235 (GYY_00205) epdL 51725..53374 (-) 1650 WP_013998534.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  GYY_RS00240 (GYY_00210) - 53384..54403 (-) 1020 WP_013998535.1 transcription initiation factor IIB -
  GYY_RS00245 (GYY_00215) - 54422..54703 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32792.47 Da        Isoelectric Point: 9.9536

>NTDB_id=41899 GYY_RS00225 WP_013998532.1 49754..50650(-) (epdJ) [Methanococcus maripaludis X1]
MDAKKYLDHVYHVLIVRNIKILKKTGRKLDERVFIGILLVITILPILLKIFLVFTLKTTLILTFVYLGSVLSLPTIIYES
KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERKLSFEDAMILVSNSLDSKIFRQVGR
LIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVTANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQ
ISKAIETIQMGSGLFGLFFAVPLFGLKVNRMIITCAVCMTFAIGTFYAVLRLTGLLFA

Nucleotide


Download         Length: 897 bp        

>NTDB_id=41899 GYY_RS00225 WP_013998532.1 49754..50650(-) (epdJ) [Methanococcus maripaludis X1]
ATGGATGCCAAAAAATACTTAGATCATGTATATCATGTTTTAATTGTACGAAATATTAAGATATTAAAAAAAACAGGTAG
AAAACTTGATGAACGAGTTTTTATCGGAATATTATTGGTTATAACGATTTTACCAATATTGTTAAAAATATTTTTAGTTT
TCACCTTAAAAACTACCTTGATTTTAACTTTTGTATATTTAGGATCCGTTCTTTCACTCCCGACGATTATATATGAATCT
AAAATGGATAAATTCGACAAAAATATACCTAAAGCATTATACGTCATGGTTTTATCACTTGATTCCGGACGTTCTGTTGT
TGAAGCAATTAATGAAGTTATAAGAAGTGGAATTCCTGAAGTGGATGTTGTTTTTTCAAAAATTGTTACATTAATGACTG
AAAGAAAATTGAGTTTTGAGGATGCAATGATACTTGTTTCAAATTCTCTTGATTCAAAAATATTCAGGCAGGTTGGAAGG
TTAATCATTGAAAATAGAAAATATGGTGGAGAGCTTGCAGACACTCTGAAAAAACTTGCAAAAACACTTGACGACCTTCA
AAATTTAAAATCCCAACTTTTAAGTGTCACTGCAAACGGTCTTGCAGTGGGCCTTATAATTCTCTGTGGTGTGATTCCTG
CAACTGCTGGTTTGATTGGGGGTTATTTAACAGTTATATCTCAGTTAGCACCAACAATGCCATCAGTTGAAGCTTCACAA
ATATCAAAAGCGATTGAAACGATACAGATGGGTTCTGGATTATTTGGGCTGTTTTTTGCGGTTCCATTATTTGGTTTAAA
AGTAAATAGAATGATAATTACGTGTGCGGTATGTATGACTTTTGCGATCGGCACATTTTATGCAGTATTGAGACTTACTG
GATTGTTGTTTGCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(94-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0H0W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

99.329

100

0.993

Multiple sequence alignment