Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | IBC08_RS00355 | Genome accession | NZ_CP061019 |
| Coordinates | 63283..63873 (+) | Length | 196 a.a. |
| NCBI ID | WP_011680603.1 | Uniprot ID | Q03MX8 |
| Organism | Streptococcus thermophilus strain 24853 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 58283..68873
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBC08_RS00335 (IBC08_00335) | - | 58794..59099 (+) | 306 | WP_002949050.1 | hypothetical protein | - |
| IBC08_RS00340 (IBC08_00340) | hexB | 59151..61094 (+) | 1944 | WP_014607839.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| IBC08_RS00345 (IBC08_00345) | - | 61224..61445 (+) | 222 | WP_002949052.1 | hypothetical protein | - |
| IBC08_RS00350 (IBC08_00350) | - | 62430..62431 (-) | 2 | WP_207559837.1 | IS3-like element ISSth1b family transposase | - |
| IBC08_RS00355 (IBC08_00355) | ruvA | 63283..63873 (+) | 591 | WP_011680603.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| IBC08_RS00360 (IBC08_00360) | - | 63880..64434 (+) | 555 | WP_011680604.1 | DNA-3-methyladenine glycosylase I | - |
| IBC08_RS00365 (IBC08_00365) | cinA | 64530..65801 (+) | 1272 | WP_011680605.1 | competence/damage-inducible protein A | Machinery gene |
| IBC08_RS00370 (IBC08_00370) | recA | 65837..67006 (+) | 1170 | WP_179970786.1 | recombinase RecA | Machinery gene |
| IBC08_RS00375 (IBC08_00375) | spx | 67183..67581 (+) | 399 | WP_207559723.1 | transcriptional regulator Spx | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21683.98 Da Isoelectric Point: 5.2834
>NTDB_id=418924 IBC08_RS00355 WP_011680603.1 63283..63873(+) (ruvA) [Streptococcus thermophilus strain 24853]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK
Nucleotide
Download Length: 591 bp
>NTDB_id=418924 IBC08_RS00355 WP_011680603.1 63283..63873(+) (ruvA) [Streptococcus thermophilus strain 24853]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Streptococcus pneumoniae TIGR4 |
66.5 |
100 |
0.679 |
| ruvA | Streptococcus pneumoniae R6 |
66.5 |
100 |
0.679 |
| ruvA | Streptococcus pneumoniae D39 |
66.5 |
100 |
0.679 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
42.647 |
100 |
0.444 |