Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SynPROS71_RS00100 Genome accession   NZ_CP047945
Coordinates   23066..24745 (-) Length   559 a.a.
NCBI ID   WP_186595862.1    Uniprot ID   -
Organism   Synechococcus sp. PROS-7-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18066..29745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynPROS71_RS00080 (SynPROS71_00016) msrB 18759..19277 (+) 519 WP_186583760.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SynPROS71_RS00085 (SynPROS71_00017) - 19312..20511 (+) 1200 WP_370586882.1 NAD(P)/FAD-dependent oxidoreductase -
  SynPROS71_RS00090 (SynPROS71_00018) - 20546..21976 (-) 1431 WP_370586830.1 type II secretion system F family protein -
  SynPROS71_RS00095 (SynPROS71_00019) pilT 21982..23055 (-) 1074 WP_186597769.1 type IV pilus twitching motility protein PilT Machinery gene
  SynPROS71_RS00100 (SynPROS71_00020) pilB/pilB1 23066..24745 (-) 1680 WP_186595862.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  SynPROS71_RS00105 (SynPROS71_00021) grpE 24841..25563 (+) 723 WP_186595863.1 nucleotide exchange factor GrpE -
  SynPROS71_RS00110 (SynPROS71_00022) dnaJ 25614..26744 (+) 1131 WP_186595864.1 molecular chaperone DnaJ -
  SynPROS71_RS00115 (SynPROS71_00023) - 26747..26989 (+) 243 WP_186583766.1 sulfurtransferase TusA family protein -
  SynPROS71_RS00120 (SynPROS71_00024) rsgA 27009..27890 (+) 882 WP_186597771.1 ribosome small subunit-dependent GTPase A -
  SynPROS71_RS00125 (SynPROS71_00025) - 27865..28206 (-) 342 WP_186595865.1 YbaB/EbfC family nucleoid-associated protein -
  SynPROS71_RS00130 (SynPROS71_00026) murB 28231..29163 (-) 933 WP_186595867.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 61212.44 Da        Isoelectric Point: 4.7983

>NTDB_id=418636 SynPROS71_RS00100 WP_186595862.1 23066..24745(-) (pilB/pilB1) [Synechococcus sp. PROS-7-1]
MSDERRRLELELLLKRTIPGTLNSSDEPDLLNHLTAMGLDPTRHNDLTATLHSLLEASEPSQSVQAEHAQTPQEAPQQVP
ESIADTATSYLAEFTVDGVLEDDPDASAMQSSSIVDLEDGLDDADRSPVINLVDRILMQALQLGASDIHVEPQQAGLQLR
FRQDGVLQTSIEPLPSRLVPAVTSRFKIMADLDIAERRVAQDGRIRRRFQNRTVDFRVNCLPSRFGEKIVLRLLDSSATQ
LGLDKLITSETTLDTVRSLGSKPFGMILVTGPTGSGKSTTLYSLLAERNDPGINISTVEDPIEYTLPGITQCQVNREKGF
DFSQALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDAPSAIARLDEMGVEPFMVSASLIGIVSQRLL
RRVCPECRIPYHPKAEELGRFGLMTSNEEGVTFFKANHREGHSDACPTCQGSGYKGRVGVYEVLRMNEVMAAAVAKGATT
DMVRQLALESGMKTLLGYSLDLVREGRTTLEEVGRMVLTDAGLESERRARALSTLTCSGCGGGLQEGWLECPYCLTPRH

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=418636 SynPROS71_RS00100 WP_186595862.1 23066..24745(-) (pilB/pilB1) [Synechococcus sp. PROS-7-1]
GTGAGTGACGAACGCCGCCGACTGGAACTGGAACTGCTGCTGAAACGCACGATCCCTGGGACCCTCAACAGCTCCGACGA
ACCGGATCTTCTGAACCACCTCACGGCGATGGGATTGGATCCGACTCGCCACAACGACCTGACAGCCACGCTGCACAGCC
TTCTCGAAGCATCCGAACCGTCTCAATCGGTCCAGGCAGAGCACGCTCAAACGCCGCAGGAAGCTCCTCAGCAAGTGCCT
GAGAGCATTGCCGACACCGCCACCTCTTATCTCGCGGAATTCACCGTGGACGGGGTCCTAGAGGACGACCCCGATGCATC
CGCGATGCAATCGTCCTCCATCGTGGACCTGGAAGACGGGCTGGACGATGCCGATCGTTCTCCAGTGATCAATCTCGTGG
ACCGGATCCTGATGCAGGCGCTGCAGCTGGGAGCCAGCGATATTCACGTGGAGCCGCAGCAGGCTGGACTGCAGTTGCGG
TTCCGCCAGGACGGCGTTCTGCAAACCAGCATCGAACCCCTACCAAGCCGCTTGGTGCCAGCGGTGACCTCCCGCTTCAA
AATCATGGCGGACCTGGATATCGCCGAGCGAAGGGTGGCCCAGGACGGGCGAATCCGACGCAGATTCCAGAACCGCACCG
TGGACTTTCGGGTGAATTGCCTACCCAGTCGCTTCGGGGAGAAGATCGTGCTGCGACTGCTGGACAGCTCCGCCACCCAG
CTGGGGCTGGACAAGCTGATCACCAGTGAGACAACGCTCGACACCGTGCGGTCTCTGGGCTCCAAACCCTTCGGCATGAT
CCTGGTGACCGGACCCACCGGATCGGGAAAATCCACCACGCTCTATTCCCTGCTGGCCGAACGCAACGACCCTGGAATCA
ATATCTCCACGGTGGAAGATCCCATCGAATACACCCTCCCCGGCATCACCCAATGCCAGGTGAACCGGGAGAAGGGGTTC
GATTTCAGCCAGGCGCTGCGGGCTTTCATGCGCCAAGACCCGGATGTGCTGCTCGTGGGCGAGACCCGCGACCTGGAAAC
GGCCAAAACCGCGATCGAGGCAGCACTCACCGGTCACCTCGTGCTCACCACCTTGCATTGCAATGACGCTCCCAGTGCCA
TCGCCCGACTGGATGAGATGGGCGTTGAACCCTTCATGGTGAGCGCTTCGTTGATCGGCATCGTCTCCCAGCGACTGCTG
CGGCGTGTCTGCCCGGAGTGCCGCATTCCTTATCACCCGAAAGCCGAGGAACTCGGTCGGTTTGGCTTGATGACCAGCAA
CGAAGAGGGCGTGACGTTCTTCAAGGCCAATCACCGCGAGGGGCATTCGGACGCTTGTCCCACCTGTCAGGGCAGCGGCT
ACAAGGGCCGGGTGGGGGTGTACGAGGTGCTGCGCATGAATGAAGTGATGGCCGCTGCGGTGGCCAAAGGAGCCACCACC
GACATGGTGCGCCAGCTGGCCCTGGAATCAGGGATGAAAACGCTGCTGGGCTACAGCCTTGATCTGGTTCGCGAAGGGCG
CACCACCCTGGAGGAAGTCGGCCGCATGGTGCTCACCGATGCCGGCCTGGAATCCGAACGGCGGGCCCGAGCCCTGAGCA
CGCTCACCTGCAGCGGATGTGGTGGCGGACTTCAGGAAGGTTGGCTGGAATGTCCGTACTGCCTTACCCCACGCCATTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(136-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

66.446

81.038

0.538

Multiple sequence alignment