Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SynNOUM97013_RS00100 Genome accession   NZ_CP047941
Coordinates   23380..25116 (-) Length   578 a.a.
NCBI ID   WP_186480271.1    Uniprot ID   -
Organism   Synechococcus sp. NOUM97013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18380..30116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynNOUM97013_RS00080 (SynNOUM97013_00016) msrB 19118..19627 (+) 510 WP_186480268.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SynNOUM97013_RS00085 (SynNOUM97013_00017) - 19662..20852 (+) 1191 WP_370586482.1 NAD(P)/FAD-dependent oxidoreductase -
  SynNOUM97013_RS00090 (SynNOUM97013_00018) - 20860..22290 (-) 1431 WP_255442841.1 type II secretion system F family protein -
  SynNOUM97013_RS00095 (SynNOUM97013_00019) pilT 22293..23369 (-) 1077 WP_186480270.1 type IV pilus twitching motility protein PilT Machinery gene
  SynNOUM97013_RS00100 (SynNOUM97013_00020) pilB/pilB1 23380..25116 (-) 1737 WP_186480271.1 GspE/PulE family protein Machinery gene
  SynNOUM97013_RS00105 (SynNOUM97013_00021) grpE 25211..25936 (+) 726 WP_186481314.1 nucleotide exchange factor GrpE -
  SynNOUM97013_RS00110 (SynNOUM97013_00022) dnaJ 25979..27109 (+) 1131 WP_186480272.1 molecular chaperone DnaJ -
  SynNOUM97013_RS00115 (SynNOUM97013_00023) - 27112..27354 (+) 243 WP_186480273.1 sulfurtransferase TusA family protein -
  SynNOUM97013_RS00120 (SynNOUM97013_00024) rsgA 27374..28255 (+) 882 WP_186481315.1 ribosome small subunit-dependent GTPase A -
  SynNOUM97013_RS00125 (SynNOUM97013_00025) - 28230..28571 (-) 342 WP_186480274.1 YbaB/EbfC family nucleoid-associated protein -
  SynNOUM97013_RS00130 (SynNOUM97013_00026) murB 28596..29528 (-) 933 WP_186480275.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63051.37 Da        Isoelectric Point: 4.7782

>NTDB_id=418593 SynNOUM97013_RS00100 WP_186480271.1 23380..25116(-) (pilB/pilB1) [Synechococcus sp. NOUM97013]
MIDDRRRLELELLLQQSIPGTLGRADAPSLLQKLKTMGFDPARHAALGEQLTALLDQQSSPHPDSASSQATPAPMHAVDA
TEPIERSADPNTEETTLAANTVAETATSYLEEFSVDGVLEQDPEEAAAESAGPEDLESSLNDADRSPVINLVDRILMQAL
QLGASDIHVEPQQAGLQLRFRQDGVLQSHIEPLPSRLIPAVTSRFKIMADLDIAERRIAQDGRIRRRFQNRTVDFRVNSL
PSRYGEKIVLRLLDSSATQLGLDKLISNPEALELVRALGSKPFGMILVTGPTGSGKSTTLYSLLAERNEPGINISTVEDP
IEYTLPGITQCQVNRDKGFDFSQALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDAPSAIARLDEMG
VEPFMVSASLIGIVSQRLLRRVCPHCRVAYRPDPEELARFGLMASHEADVSFFKANHQDGEFNNCPHCQGSGYKGRVGVY
EVLRMNEELAAAVAKGATTDMVRQLALEGGMKTLLGYSLDLVREGHTTLEEVGRMVLTDAGLESERRARALSSLTCSGCG
GGLQEGWLECPYCLTPRH

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=418593 SynNOUM97013_RS00100 WP_186480271.1 23380..25116(-) (pilB/pilB1) [Synechococcus sp. NOUM97013]
GTGATCGACGATCGCCGGCGTCTCGAACTTGAATTGCTGTTGCAGCAGTCGATCCCGGGAACTCTCGGCCGTGCCGATGC
GCCATCCCTGCTGCAGAAGCTGAAAACGATGGGCTTCGATCCAGCACGGCATGCCGCGCTGGGCGAACAGCTCACTGCAT
TGCTGGATCAGCAGTCCTCCCCGCATCCAGACAGCGCGTCGAGCCAGGCCACCCCTGCACCGATGCATGCCGTCGACGCA
ACCGAACCGATCGAGCGTTCAGCCGACCCAAACACCGAAGAGACCACCCTTGCGGCGAACACCGTGGCGGAGACCGCCAC
CTCCTACCTGGAGGAGTTCTCCGTGGATGGCGTTCTGGAGCAGGACCCGGAGGAGGCAGCAGCGGAATCAGCCGGACCGG
AGGATCTGGAGTCGAGCCTCAACGATGCGGACCGTTCGCCGGTAATCAACCTGGTGGACCGAATCCTGATGCAGGCCCTT
CAACTGGGAGCCAGTGACATTCACGTGGAGCCCCAGCAAGCAGGTCTGCAACTGCGCTTCCGTCAGGACGGTGTGCTGCA
AAGCCACATTGAACCCCTGCCCAGCCGGCTGATCCCGGCCGTGACCTCCCGCTTCAAAATCATGGCGGACCTGGACATCG
CCGAACGCCGCATCGCCCAGGACGGTCGGATCCGCCGTCGTTTCCAGAACCGCACGGTGGACTTCCGGGTGAACAGCCTG
CCCAGCCGCTACGGCGAAAAGATCGTGCTGCGACTGCTCGACAGCTCCGCGACCCAGCTGGGTCTCGACAAGCTGATCAG
CAACCCGGAGGCGCTGGAACTGGTGCGAGCCCTCGGGTCCAAACCGTTCGGAATGATCCTGGTGACTGGTCCGACGGGAT
CCGGTAAATCGACCACCCTCTATTCATTGCTGGCGGAACGCAACGAGCCGGGAATCAACATCTCCACGGTTGAAGATCCG
ATCGAATACACCTTGCCCGGGATCACCCAATGCCAGGTGAATCGCGACAAAGGGTTCGATTTCAGTCAGGCCCTGCGGGC
CTTCATGCGTCAGGACCCGGACGTGCTGCTGGTGGGAGAGACCCGCGATCTGGAAACAGCGAAAACAGCCATTGAGGCAG
CCCTGACCGGTCACCTGGTATTGACCACCCTGCATTGCAACGACGCCCCCAGCGCCATCGCCCGTCTGGATGAGATGGGG
GTGGAACCGTTCATGGTCAGCGCCTCCCTGATCGGGATCGTCTCCCAGCGACTGCTGCGGCGGGTCTGCCCCCACTGCCG
CGTCGCCTACCGCCCGGACCCTGAGGAACTGGCGCGGTTCGGATTGATGGCCAGCCATGAAGCCGATGTGAGCTTTTTCA
AGGCCAATCACCAAGACGGGGAGTTCAACAACTGCCCTCACTGCCAGGGCAGCGGATACAAGGGCCGGGTTGGGGTGTAT
GAGGTGCTGCGCATGAACGAGGAACTTGCGGCAGCCGTGGCCAAAGGCGCCACCACCGACATGGTGCGGCAACTGGCTCT
CGAAGGCGGCATGAAGACCCTGCTGGGGTACAGCCTCGATCTGGTGCGGGAAGGCCACACCACCCTGGAGGAGGTGGGGC
GCATGGTGCTCACCGACGCAGGCCTGGAATCGGAACGGCGCGCCCGGGCCCTGAGCTCACTCACCTGCAGTGGATGTGGT
GGCGGACTCCAGGAAGGTTGGCTGGAATGCCCTTACTGCCTGACACCACGTCATTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(155-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

65.789

78.893

0.519

Multiple sequence alignment