Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GWG03_RS13800 | Genome accession | NZ_CP047924 |
| Coordinates | 2792694..2793164 (+) | Length | 156 a.a. |
| NCBI ID | WP_103147866.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SR130 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2776262..2798971 | 2792694..2793164 | within | 0 |
Gene organization within MGE regions
Location: 2776262..2798971
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GWG03_RS13680 (GWG03_13745) | - | 2776262..2777485 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| GWG03_RS13685 (GWG03_13750) | lukH | 2777921..2778976 (+) | 1056 | WP_103147861.1 | bi-component leukocidin LukGH subunit H | - |
| GWG03_RS13690 (GWG03_13755) | lukG | 2778998..2780014 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| GWG03_RS13695 (GWG03_13760) | sph | 2780252..2781082 (-) | 831 | Protein_2673 | sphingomyelin phosphodiesterase | - |
| GWG03_RS13700 (GWG03_13765) | - | 2781133..2782170 (-) | 1038 | WP_000857188.1 | site-specific integrase | - |
| GWG03_RS13705 (GWG03_13770) | - | 2782231..2783304 (-) | 1074 | WP_234743860.1 | Abi family protein | - |
| GWG03_RS13710 (GWG03_13775) | - | 2783602..2783769 (-) | 168 | WP_031806878.1 | hypothetical protein | - |
| GWG03_RS13715 (GWG03_13780) | - | 2783969..2784154 (-) | 186 | WP_103147863.1 | hypothetical protein | - |
| GWG03_RS13720 | - | 2784151..2784297 (-) | 147 | WP_001049401.1 | hypothetical protein | - |
| GWG03_RS13725 (GWG03_13785) | - | 2784309..2785016 (-) | 708 | WP_000094093.1 | XRE family transcriptional regulator | - |
| GWG03_RS13730 (GWG03_13790) | - | 2785187..2785426 (+) | 240 | WP_000548576.1 | helix-turn-helix transcriptional regulator | - |
| GWG03_RS13735 (GWG03_13795) | - | 2785439..2785699 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| GWG03_RS13740 (GWG03_13800) | - | 2785723..2786262 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| GWG03_RS13745 (GWG03_13805) | - | 2786319..2787074 (+) | 756 | WP_001148343.1 | phage antirepressor KilAC domain-containing protein | - |
| GWG03_RS13750 (GWG03_13810) | - | 2787090..2787287 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| GWG03_RS13755 (GWG03_13815) | - | 2787274..2787654 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| GWG03_RS13760 (GWG03_13820) | - | 2787709..2788029 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| GWG03_RS13765 (GWG03_13825) | - | 2788026..2788187 (+) | 162 | WP_031766022.1 | DUF1270 domain-containing protein | - |
| GWG03_RS13770 (GWG03_13830) | - | 2788281..2788584 (+) | 304 | Protein_2688 | DUF2482 family protein | - |
| GWG03_RS13775 (GWG03_13835) | - | 2788589..2788849 (+) | 261 | WP_000291506.1 | DUF1108 family protein | - |
| GWG03_RS13780 (GWG03_13840) | - | 2788858..2789121 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| GWG03_RS13785 (GWG03_13845) | - | 2789130..2791073 (+) | 1944 | WP_103147865.1 | AAA family ATPase | - |
| GWG03_RS13790 (GWG03_13850) | - | 2791075..2791995 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| GWG03_RS13795 (GWG03_13855) | - | 2792076..2792693 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| GWG03_RS13800 (GWG03_13860) | ssbA | 2792694..2793164 (+) | 471 | WP_103147866.1 | single-stranded DNA-binding protein | Machinery gene |
| GWG03_RS13805 (GWG03_13865) | - | 2793194..2794087 (+) | 894 | WP_031770227.1 | DnaD domain-containing protein | - |
| GWG03_RS13810 (GWG03_13870) | - | 2794094..2794312 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| GWG03_RS13815 (GWG03_13875) | - | 2794321..2794776 (+) | 456 | WP_000401965.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GWG03_RS13820 (GWG03_13880) | - | 2794789..2795157 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| GWG03_RS13825 (GWG03_13885) | - | 2795161..2795403 (+) | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| GWG03_RS13830 (GWG03_13890) | - | 2795418..2795672 (+) | 255 | WP_001065045.1 | DUF1024 family protein | - |
| GWG03_RS13835 (GWG03_13895) | - | 2795659..2795820 (+) | 162 | WP_000714417.1 | hypothetical protein | - |
| GWG03_RS13840 (GWG03_13900) | - | 2795820..2796356 (+) | 537 | WP_000185669.1 | dUTP diphosphatase | - |
| GWG03_RS13845 (GWG03_13905) | - | 2796393..2796638 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| GWG03_RS13850 (GWG03_13910) | - | 2796635..2796841 (+) | 207 | WP_047216556.1 | DUF1381 domain-containing protein | - |
| GWG03_RS13855 (GWG03_13915) | - | 2796838..2796987 (+) | 150 | WP_031761843.1 | transcriptional regulator | - |
| GWG03_RS13860 (GWG03_13920) | - | 2797146..2797796 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| GWG03_RS13865 (GWG03_13925) | - | 2797796..2797996 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| GWG03_RS13870 (GWG03_13930) | - | 2798024..2798440 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| GWG03_RS13875 (GWG03_13935) | - | 2798672..2798971 (+) | 300 | WP_000988330.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17611.49 Da Isoelectric Point: 5.2672
>NTDB_id=418481 GWG03_RS13800 WP_103147866.1 2792694..2793164(+) (ssbA) [Staphylococcus aureus strain SR130]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVFVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVFVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=418481 GWG03_RS13800 WP_103147866.1 2792694..2793164(+) (ssbA) [Staphylococcus aureus strain SR130]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTCGATGGCAGATTACAAACGCGT
AATTATGAAAATAAGGAAGGTCAACGTGTGTTTGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTCGATGGCAGATTACAAACGCGT
AATTATGAAAATAAGGAAGGTCAACGTGTGTTTGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
67.949 |
0.397 |