Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SALIVB_RS09000 Genome accession   NC_015760
Coordinates   1964494..1965012 (-) Length   172 a.a.
NCBI ID   WP_013991184.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1959494..1970012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS08980 (SALIVB_1876) - 1961412..1962356 (+) 945 WP_013991181.1 magnesium transporter CorA family protein -
  SALIVB_RS08985 (SALIVB_1877) - 1962426..1963097 (+) 672 WP_013991182.1 DUF1129 domain-containing protein -
  SALIVB_RS08990 (SALIVB_1878) - 1963208..1964089 (+) 882 WP_013991183.1 DUF4300 family protein -
  SALIVB_RS08995 (SALIVB_1879) rpsR 1964213..1964452 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  SALIVB_RS09000 (SALIVB_1880) ssb 1964494..1965012 (-) 519 WP_013991184.1 single-stranded DNA-binding protein Machinery gene
  SALIVB_RS09005 (SALIVB_1881) rpsF 1965024..1965314 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  SALIVB_RS09010 (SALIVB_1882) - 1965518..1966471 (+) 954 WP_013991185.1 hypothetical protein -
  SALIVB_RS09020 (SALIVB_1886) mutY 1967639..1968790 (+) 1152 WP_013991186.1 A/G-specific adenine glycosylase -
  SALIVB_RS09025 (SALIVB_1888) - 1969113..1969349 (-) 237 WP_013991187.1 hypothetical protein -
  SALIVB_RS11145 - 1969370..1969771 (-) 402 WP_004183523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18567.29 Da        Isoelectric Point: 4.9163

>NTDB_id=41843 SALIVB_RS09000 WP_013991184.1 1964494..1965012(-) (ssb) [Streptococcus salivarius CCHSS3]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVSRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=41843 SALIVB_RS09000 WP_013991184.1 1964494..1965012(-) (ssb) [Streptococcus salivarius CCHSS3]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAGCCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.471

100

0.581
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.763

100

0.581
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment