Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SALIVB_RS08225 Genome accession   NC_015760
Coordinates   1806240..1807274 (-) Length   344 a.a.
NCBI ID   WP_414820286.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1801240..1812274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS08200 (SALIVB_1710) ilvD 1801511..1803229 (-) 1719 WP_155213953.1 dihydroxy-acid dehydratase -
  SALIVB_RS08205 (SALIVB_1711) - 1803342..1804523 (+) 1182 WP_013991068.1 NAD(P)/FAD-dependent oxidoreductase -
  SALIVB_RS08215 (SALIVB_1713) trmB 1804740..1805381 (-) 642 WP_004183261.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SALIVB_RS08220 (SALIVB_1714) ccrZ 1805391..1806182 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  SALIVB_RS08225 (SALIVB_1715) pptB 1806240..1807274 (-) 1035 WP_414820286.1 ABC transporter permease Regulator
  SALIVB_RS08230 (SALIVB_1716) pptA 1807274..1808005 (-) 732 WP_013991070.1 ABC transporter ATP-binding protein Regulator
  SALIVB_RS08235 (SALIVB_1717) - 1808070..1808489 (+) 420 WP_004183267.1 HIT family protein -
  SALIVB_RS08240 (SALIVB_1718) - 1808486..1808785 (+) 300 WP_013991071.1 hypothetical protein -
  SALIVB_RS10895 (SALIVB_1719) - 1808966..1809133 (-) 168 WP_013991072.1 hypothetical protein -
  SALIVB_RS08245 (SALIVB_1720) - 1809710..1810318 (-) 609 WP_013991073.1 DUF4230 domain-containing protein -
  SALIVB_RS11100 (SALIVB_1721) - 1810336..1810461 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39903.37 Da        Isoelectric Point: 10.5822

>NTDB_id=41838 SALIVB_RS08225 WP_414820286.1 1806240..1807274(-) (pptB) [Streptococcus salivarius CCHSS3]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRAYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAVCLFDLKFS
LILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=41838 SALIVB_RS08225 WP_414820286.1 1806240..1807274(-) (pptB) [Streptococcus salivarius CCHSS3]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGATCA
TTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAAATC
CGTGGGCAATCATTCTTGGCTTGCTTGTGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAACCT
GCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTAATAGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTCATTTTTCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAGGCTATTGCAGCAGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAGGGGATTACGTCGAGTGTTAAACGCCGTGCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CCTGGTACAATCTTTACCTAAGAGCTTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGTCTACGACTTTTTGCCCTAACG
CTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTTCCA
GCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTGTTTGTCTCTTCGACCTTAAGTTTAGT
CTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.384

100

0.974

  pptB Streptococcus thermophilus LMD-9

93.023

100

0.93


Multiple sequence alignment