Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SALIVB_RS08230 Genome accession   NC_015760
Coordinates   1807274..1808005 (-) Length   243 a.a.
NCBI ID   WP_013991070.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1802274..1813005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS08205 (SALIVB_1711) - 1803342..1804523 (+) 1182 WP_013991068.1 NAD(P)/FAD-dependent oxidoreductase -
  SALIVB_RS08215 (SALIVB_1713) trmB 1804740..1805381 (-) 642 WP_004183261.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SALIVB_RS08220 (SALIVB_1714) ccrZ 1805391..1806182 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  SALIVB_RS08225 (SALIVB_1715) pptB 1806240..1807274 (-) 1035 WP_414820286.1 ABC transporter permease Regulator
  SALIVB_RS08230 (SALIVB_1716) pptA 1807274..1808005 (-) 732 WP_013991070.1 ABC transporter ATP-binding protein Regulator
  SALIVB_RS08235 (SALIVB_1717) - 1808070..1808489 (+) 420 WP_004183267.1 HIT family protein -
  SALIVB_RS08240 (SALIVB_1718) - 1808486..1808785 (+) 300 WP_013991071.1 hypothetical protein -
  SALIVB_RS10895 (SALIVB_1719) - 1808966..1809133 (-) 168 WP_013991072.1 hypothetical protein -
  SALIVB_RS08245 (SALIVB_1720) - 1809710..1810318 (-) 609 WP_013991073.1 DUF4230 domain-containing protein -
  SALIVB_RS11100 (SALIVB_1721) - 1810336..1810461 (-) 126 WP_002884447.1 hypothetical protein -
  SALIVB_RS08250 (SALIVB_1722) - 1810897..1813002 (-) 2106 WP_013991074.1 AAA family ATPase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26855.14 Da        Isoelectric Point: 4.5340

>NTDB_id=41839 SALIVB_RS08230 WP_013991070.1 1807274..1808005(-) (pptA) [Streptococcus salivarius CCHSS3]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQNPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRQTFGDDSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=41839 SALIVB_RS08230 WP_013991070.1 1807274..1808005(-) (pptA) [Streptococcus salivarius CCHSS3]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACCATCCAGCAAAATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTCTATGAAGAGTTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTTAACCCCAGTCTTTTCATTGTTGATGAACCCTTC
TTGGGTTTGGATCCCTTGGCAATCTCCGACCTAATTGAGCTTTTAGCTGAGGAAAAAGCTAAGGGCAAGGCGATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGGTCTTAGCACAGG
GGACTCTCGAGGAGCTCCGTCAGACTTTTGGCGACGATAGTGCTAGTCTTAACGATATCTACATGCAGTTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

99.177

100

0.992
  pptA Streptococcus thermophilus LMD-9

97.119

100

0.971

Multiple sequence alignment