Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SALIVB_RS06935 Genome accession   NC_015760
Coordinates   1538728..1539729 (-) Length   333 a.a.
NCBI ID   WP_013990901.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533728..1544729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS06915 (SALIVB_1438) eno 1534477..1535781 (-) 1305 WP_002886048.1 surface-displayed alpha-enolase -
  SALIVB_RS06920 (SALIVB_1439) - 1535987..1536442 (+) 456 WP_013990898.1 YueI family protein -
  SALIVB_RS06925 (SALIVB_1440) - 1536473..1537588 (-) 1116 WP_013990899.1 glycerate kinase -
  SALIVB_RS06930 (SALIVB_1441) - 1537601..1538668 (-) 1068 WP_013990900.1 MmcQ/YjbR family DNA-binding protein -
  SALIVB_RS06935 (SALIVB_1442) ccpA 1538728..1539729 (-) 1002 WP_013990901.1 catabolite control protein A Regulator
  SALIVB_RS06940 (SALIVB_1444) - 1540043..1541128 (+) 1086 WP_013990902.1 M24 family metallopeptidase -
  SALIVB_RS06945 (SALIVB_1445) - 1541228..1541596 (-) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  SALIVB_RS06950 (SALIVB_1446) - 1541598..1543004 (-) 1407 WP_013990903.1 Cof-type HAD-IIB family hydrolase -
  SALIVB_RS06955 (SALIVB_1447) smpB 1543151..1543615 (-) 465 WP_002885905.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36662.61 Da        Isoelectric Point: 5.4824

>NTDB_id=41832 SALIVB_RS06935 WP_013990901.1 1538728..1539729(-) (ccpA) [Streptococcus salivarius CCHSS3]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDCVTQLAKNNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=41832 SALIVB_RS06935 WP_013990901.1 1538728..1539729(-) (ccpA) [Streptococcus salivarius CCHSS3]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACTACTACTGTAGGAGTTGTCATCCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTACAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTGTTTGCCAAACAAGTAGACGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCTCGTACCCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTTGAACACCAATTACCGAGT
GTTAACATCGACTATAAAGCTGCTGTTGAGGATTGTGTAACGCAACTTGCTAAAAATAATGAAAAGGTTGCCTTTGTATC
AGGACCACTAATTGATGATATTAATGGCAAGCTCCGTCTAGCTGGTTATAAGGCCGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGTCTTGTTTTTGAAGCTAAATACAGCTATAAAGACGGCTTTGATCTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGAGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCCGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGACTCACCAATTACAAGCTATACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAGCTTGAAGAAAAAGATGTT
ATTCTTAATCATGGTCTTACCTTACGTCAGTCAACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(182-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.177

100

0.772
  ccpA Streptococcus pneumoniae D39

76.276

100

0.763
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.287

99.399

0.55

Multiple sequence alignment