Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   M594_RS08495 Genome accession   NZ_CP047883
Coordinates   1769221..1771203 (-) Length   660 a.a.
NCBI ID   WP_173876563.1    Uniprot ID   A0A6M9F7B8
Organism   Streptococcus mitis strain S022-V3-A4     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764221..1776203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS08495 (M594_08535) amiA3 1769221..1771203 (-) 1983 WP_173876563.1 peptide ABC transporter substrate-binding protein Regulator
  M594_RS08500 (M594_08540) - 1771444..1772496 (-) 1053 WP_173876564.1 sugar transferase -
  M594_RS08505 (M594_08545) glf 1772521..1773618 (-) 1098 WP_173876565.1 UDP-galactopyranose mutase -
  M594_RS08510 (M594_08550) - 1773749..1774897 (-) 1149 WP_173876566.1 polysaccharide polymerase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72938.42 Da        Isoelectric Point: 4.7456

>NTDB_id=418272 M594_RS08495 WP_173876563.1 1769221..1771203(-) (amiA3) [Streptococcus mitis strain S022-V3-A4]
MKSSKFLALAGVTLLATGVLAACSGSGSGAKGEKTFSYIYETDPDNLNYLTTGKAATANITSNVVDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAAVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEIKDFSQVG
IKALDDQTVQYTLNKPESFWNSKTTMGVMAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFAKNPNYWD
KDNVHIDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYPETEKSFKDNIVYTQQDSTTYLVGTNIDRQSYKFTSK
TTDEQKTSTKKALLNKDFRQALAFGFDRTAYASQVNGASGATKLLRNVFVPPTFVQADGKNFGELVKEKLATYGDEWSNV
NLADAQDGLYNPEKAKAEFAKAKTALQAEGVQFPIHLDMPVDQTNTTKVQRVQSFKQSVEATLGTENVVVDIQQLQKDDV
LNITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKKVGLEDYEKMVVEAGEEVG
NVSKRYEKYAAAQAWLTDSALIIPTTSQTGRPMLSKMVPFTLPFAYSGNKGTSEALLYKYLEVQDKAVTVDEYQKAQEKW
MKEKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=418272 M594_RS08495 WP_173876563.1 1769221..1771203(-) (amiA3) [Streptococcus mitis strain S022-V3-A4]
ATGAAAAGTTCAAAATTTCTTGCCCTTGCGGGTGTTACGTTATTGGCAACTGGTGTTTTAGCTGCTTGCTCTGGCTCAGG
TTCAGGTGCTAAAGGTGAGAAGACATTCTCATACATTTATGAAACAGATCCGGACAACCTGAACTACTTGACAACTGGTA
AGGCTGCGACAGCAAATATCACTAGCAACGTAGTGGATGGTTTGTTGGAAAATGATCGTTACGGTAATTTTGTACCATCA
ATGGCCGAAGACTGGTCAGTATCTAAAGATGGTTTGACTTACACCTACACGATTCGTAAGGATGCAAAATGGTATACATC
TGAAGGTGAAGAATACGCTGCAGTTAAAGCGCAAGATTTTGTTACAGGTCTGAAATATGCAGCTGATAAAAAATCAGATG
GTCTTTACCTTGTGCAAGAGTCAATTAAAGGCTTGGATGCTTATGTGAAAGGTGAAATCAAAGATTTCTCACAAGTCGGA
ATCAAGGCTCTTGATGATCAAACAGTTCAATACACCTTGAATAAACCAGAAAGTTTTTGGAATTCTAAGACAACAATGGG
AGTGATGGCTCCAGTTAATGAAGAGTTCTTAAACTCTAAGGGAGACGATTTTGCCAAAGGAACAGATCCAAGTAGTATTC
TCTACAATGGTCCATTCTTGCTCAAATCTATTGTAGCTAAATCTTCTGTTGAATTTGCTAAAAATCCAAACTACTGGGAT
AAGGACAATGTCCATATTGATAAGGTCAAATTATCATTCTGGGATGGACAAGATACCAACAAACCGACTGAAGCCTTCAA
GGATGGTAGCTTCACTATGGCCCGTCTCTTCCCAACTAGCGCAAGCTATCCAGAGACTGAGAAATCATTTAAAGATAACA
TTGTTTATACCCAACAGGATTCAACTACTTACTTGGTAGGTACTAACATTGATCGTCAGTCATATAAATTTACATCTAAG
ACTACAGATGAACAGAAGACATCAACTAAGAAAGCACTTCTTAACAAAGACTTCCGTCAAGCACTTGCATTTGGTTTTGA
CAGAACAGCCTATGCTTCACAGGTAAATGGTGCTAGTGGGGCAACTAAACTTCTTCGTAACGTGTTTGTACCACCTACAT
TTGTACAAGCAGATGGAAAAAACTTTGGTGAGTTAGTAAAAGAAAAATTGGCAACTTACGGAGATGAATGGAGTAATGTT
AACTTAGCAGATGCTCAAGACGGTCTGTACAATCCTGAAAAAGCTAAAGCAGAATTTGCTAAGGCTAAGACTGCTCTTCA
GGCAGAAGGAGTACAGTTCCCAATTCATTTGGACATGCCTGTTGATCAAACAAACACAACAAAAGTTCAACGTGTTCAAT
CTTTCAAACAATCAGTTGAAGCAACTTTGGGAACAGAAAATGTTGTTGTGGATATTCAACAACTTCAAAAAGACGATGTC
TTGAACATTACTTACTTTGCTGAAACAGCTGCTGGCGAAGATTGGGATATCTCAGATAACGTTGGTTGGTCTCCAGACTT
TGCAGACCCATCTACTTACCTTGATATCATCAAGCCATCTGTTGGAGAAAATACTAAGACTTATCTAGGATTTGATTCTG
GAACTAACAATGCTGCTGCTAAGAAAGTTGGTTTGGAAGATTATGAAAAGATGGTTGTAGAAGCTGGTGAAGAAGTTGGT
AACGTTTCAAAACGTTATGAAAAATATGCTGCTGCCCAAGCTTGGTTGACAGATAGTGCCTTGATCATTCCAACAACATC
ACAGACAGGTCGTCCAATGTTGTCTAAGATGGTACCATTCACACTTCCATTTGCTTATTCTGGAAACAAAGGAACAAGTG
AAGCTCTCTTGTACAAATATCTAGAAGTACAGGATAAAGCTGTGACAGTTGATGAGTATCAAAAAGCTCAAGAAAAATGG
ATGAAAGAAAAAGAAGAGTCTAATAAAAAAGCTCAAGAAGATTTAGCAAATCATGTGAAGTAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9F7B8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.607

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.002

100

0.591
  amiA Streptococcus salivarius strain HSISS4

58.548

100

0.586

Multiple sequence alignment