Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   M594_RS01255 Genome accession   NZ_CP047883
Coordinates   244089..246053 (+) Length   654 a.a.
NCBI ID   WP_173875758.1    Uniprot ID   A0A6M9F8H2
Organism   Streptococcus mitis strain S022-V3-A4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 239089..251053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS01230 (M594_01255) - 239866..241257 (+) 1392 WP_173875756.1 Cof-type HAD-IIB family hydrolase -
  M594_RS01235 (M594_01260) - 241385..241837 (-) 453 WP_000079148.1 universal stress protein -
  M594_RS01240 (M594_01265) - 241999..242301 (+) 303 WP_173875757.1 hypothetical protein -
  M594_RS01245 (M594_01270) - 242458..243672 (+) 1215 WP_000666455.1 pyridoxal phosphate-dependent aminotransferase -
  M594_RS01250 (M594_01275) rpmH 243817..243951 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  M594_RS01255 (M594_01280) amiA 244089..246053 (+) 1965 WP_173875758.1 peptide ABC transporter substrate-binding protein Regulator
  M594_RS01260 (M594_01285) - 246341..248185 (-) 1845 WP_173875759.1 APC family permease -
  M594_RS01265 (M594_01290) - 248342..249115 (+) 774 WP_173875760.1 TatD family hydrolase -
  M594_RS01270 (M594_01295) rnmV 249115..249681 (+) 567 WP_049502254.1 ribonuclease M5 -
  M594_RS01275 (M594_01300) rsmA 249747..250619 (+) 873 WP_001216838.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 73035.21 Da        Isoelectric Point: 4.7472

>NTDB_id=418235 M594_RS01255 WP_173875758.1 244089..246053(+) (amiA) [Streptococcus mitis strain S022-V3-A4]
MKKSKVMLFGAMALTAGLALAACGSSQSSNADKTYSYIFVSNPDTLDYITSTRDSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKSSDFGTVGV
KAVDDYTLQYTLNQPETYWNSKTTASILSPVNEAFLKSQGDDFGSVTPSSILSNGPYLFKSFTSKSLIELDKNPNYWDKD
KVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTITPSNFVQVGDKNFGDIVNEKIVNYGKDWANINL
NDGKQAFLNPEKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKENVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDPETGSQLKNMGLSEGKDKEVKDKIGLADYKKLLDQADAEITDTQA
RYEKYAEAQAWLTDSALFLPVQSGGANPIFRKTVPFTGPFSFVGHKGNADNYKYVELQKEPVTAKQYQELYEKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=418235 M594_RS01255 WP_173875758.1 244089..246053(+) (amiA) [Streptococcus mitis strain S022-V3-A4]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGTGGGTCTTCCCA
ATCAAGTAATGCAGACAAGACTTACTCTTATATCTTTGTTAGCAACCCAGATACCTTGGATTATATTACCTCTACTCGAG
ACTCAACATCTAGTATCACAACCAACTTGATTGATGGGTTGTTGGAAAATGACCAGTATGGCAATCTCATCCCATCTATG
GCTGAGTCATGGACAGTGTCAAAAGATGGTTTGACCTACACTTATAAAATCCGTCAGGGGGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCAGATGTAACGGCTCATGACTTTGTGACAGGTCTCAAGTATGCGGCTGATAAAAAAGCTGAAAACT
TGTACTTGGTACAAGACTCTATCAAGGGGCTAGCAGACTATGTTGAAGGAAAATCATCTGATTTTGGAACTGTTGGTGTT
AAGGCAGTGGATGATTACACGCTACAATACACTCTCAACCAACCTGAGACTTATTGGAACTCTAAAACAACAGCAAGTAT
CCTTAGTCCTGTAAATGAAGCCTTCTTGAAGTCTCAGGGAGATGACTTTGGAAGTGTGACACCATCAAGTATCTTGTCAA
ATGGTCCTTACTTATTTAAATCATTCACATCCAAATCTTTGATTGAACTTGACAAAAACCCTAATTACTGGGATAAGGAC
AAGGTCAAAATTGAGAAAGTGAAACTCTCTTTCTTTGACGGTTCTGACCAAGACAGCATTGCTAGAGGTTTCTTGGATGG
TAACTATACAGATGGTCGTATCTTCCCAACAAGTTCAGTCTTTGCTGAACTCAAGAAGGGAAATGAGGACAAGATTACCT
ATACACCACAAAACTCAGTTACTTTCTACTATCTTTTCAACGTCAATCGTCAAAGCTACAAGCAGACTATGAAACAGTCT
GATAAGGAAAAGACAGATTCACGCGCAGCTATGCAAAATAAAGATTTCCGTCAGGCTATCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCGCAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACGATTACACCAAGTAACTTTGTCC
AAGTTGGTGATAAGAACTTCGGTGATATTGTCAATGAAAAAATTGTCAATTACGGTAAAGATTGGGCAAATATCAATCTA
AACGATGGTAAGCAAGCCTTCTTGAATCCTGAAAAGGCCAAAGAAAAATTTGCTAAGGCTAAAGAAAGTCTGCAAGCACA
GGGAGTAACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCTAAATTAGATGTGCAACAGGCTGGATCTTTCA
AACAAACAGTGGAAGAAACTCTTGGTAAGGAGAATGTAGTTATCGACGTTATCCAACTTTCTCCAGATGAAAAAGACCAA
GCAACCTACTTTGCAGATACAGCAGAACAAAAAGACTACGATATCGACATCTCAGGATGGGGTGGAGACTACTCAGACCC
TAAGACTTACCTAGCTATTCTTGATCCAGAGACAGGCTCTCAGTTGAAAAACATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTCAAGGACAAGATTGGTCTTGCTGACTACAAGAAACTCTTGGATCAGGCTGATGCGGAAATCACAGATACTCAAGCT
CGCTATGAAAAATATGCTGAAGCCCAAGCTTGGTTGACAGATAGTGCCCTCTTCCTACCAGTTCAAAGTGGTGGAGCTAA
CCCAATCTTCCGTAAGACTGTACCGTTTACAGGACCATTCTCATTCGTTGGTCATAAGGGAAATGCGGACAACTACAAAT
ATGTTGAATTGCAAAAAGAGCCAGTCACTGCTAAACAGTACCAAGAACTCTATGAAAAATGGCTGAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCACATTCAATGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9F8H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.015

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.711

100

0.55

Multiple sequence alignment