Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E3S71_RS04015 Genome accession   NZ_CP047852
Coordinates   797788..798660 (-) Length   290 a.a.
NCBI ID   WP_160199878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_274     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 792788..803660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S71_RS04005 (E3S71_04005) trmFO 794076..795383 (-) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  E3S71_RS04010 (E3S71_04010) topA 795539..797614 (-) 2076 WP_025174257.1 type I DNA topoisomerase -
  E3S71_RS04015 (E3S71_04015) dprA 797788..798660 (-) 873 WP_160199878.1 DNA-processing protein DprA Machinery gene
  E3S71_RS04020 (E3S71_04020) sucD 798984..799892 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  E3S71_RS04025 (E3S71_04025) sucC 799914..801080 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  E3S71_RS04030 (E3S71_04030) - 801189..801956 (-) 768 WP_000176406.1 ribonuclease HII -
  E3S71_RS04035 (E3S71_04035) ylqF 801940..802824 (-) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33276.56 Da        Isoelectric Point: 8.3112

>NTDB_id=417850 E3S71_RS04015 WP_160199878.1 797788..798660(-) (dprA) [Staphylococcus aureus strain UP_274]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLFSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLTLRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=417850 E3S71_RS04015 WP_160199878.1 797788..798660(-) (dprA) [Staphylococcus aureus strain UP_274]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCTTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAAC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.347

100

0.683
  dprA Staphylococcus aureus N315

66.552

100

0.666
  dprA Lactococcus lactis subsp. cremoris KW2

37.857

96.552

0.366

Multiple sequence alignment