Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E3S92_RS02080 Genome accession   NZ_CP047833
Coordinates   389963..390649 (+) Length   228 a.a.
NCBI ID   WP_160190102.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_926     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384963..395649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S92_RS02045 (E3S92_02045) yqeH 385490..386590 (+) 1101 WP_001280146.1 ribosome biogenesis GTPase YqeH -
  E3S92_RS02050 (E3S92_02050) aroE 386604..387410 (+) 807 WP_000666750.1 shikimate dehydrogenase -
  E3S92_RS02055 (E3S92_02055) yhbY 387414..387704 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  E3S92_RS02060 (E3S92_02060) nadD 387707..388276 (+) 570 WP_000725165.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E3S92_RS02065 (E3S92_02065) yqeK 388266..388850 (+) 585 WP_001017837.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E3S92_RS02070 (E3S92_02070) rsfS 388851..389204 (+) 354 WP_001088020.1 ribosome silencing factor -
  E3S92_RS02075 (E3S92_02075) - 389207..389923 (+) 717 WP_000084840.1 class I SAM-dependent DNA methyltransferase -
  E3S92_RS02080 (E3S92_02080) comEA 389963..390649 (+) 687 WP_160190102.1 ComEA family DNA-binding protein Machinery gene
  E3S92_RS02085 (E3S92_02085) - 390741..391202 (+) 462 WP_000439693.1 ComE operon protein 2 -
  E3S92_RS02090 (E3S92_02090) comEC 391207..393408 (+) 2202 WP_001622275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E3S92_RS02095 (E3S92_02095) holA 393465..394439 (+) 975 WP_001282573.1 DNA polymerase III subunit delta -
  E3S92_RS02100 (E3S92_02100) rpsT 394484..394735 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25840.46 Da        Isoelectric Point: 9.3305

>NTDB_id=417418 E3S92_RS02080 WP_160190102.1 389963..390649(+) (comEA) [Staphylococcus aureus strain UP_926]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGENSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQVKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=417418 E3S92_RS02080 WP_160190102.1 389963..390649(+) (comEA) [Staphylococcus aureus strain UP_926]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACACCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGAAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGT
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956
  comEA Staphylococcus aureus N315

96.035

99.561

0.956

Multiple sequence alignment