Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3S62_RS02585 Genome accession   NZ_CP047803
Coordinates   466863..467309 (+) Length   148 a.a.
NCBI ID   WP_160199701.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1097     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461863..472309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S62_RS02550 (E3S62_02550) - 462357..462560 (+) 204 WP_000087561.1 YqgQ family protein -
  E3S62_RS02555 (E3S62_02555) - 462557..463543 (+) 987 WP_000161307.1 ROK family glucokinase -
  E3S62_RS02560 (E3S62_02560) - 463543..463872 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S62_RS02565 (E3S62_02565) - 463869..464492 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  E3S62_RS02570 (E3S62_02570) comGA 464544..465518 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S62_RS02575 (E3S62_02575) comGB 465490..466560 (+) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S62_RS02580 (E3S62_02580) comGC 466574..466885 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S62_RS02585 (E3S62_02585) comGD 466863..467309 (+) 447 WP_160199701.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S62_RS02590 (E3S62_02590) comGE 467296..467595 (+) 300 WP_195758580.1 competence protein ComGE Machinery gene
  E3S62_RS02595 (E3S62_02595) comGF 467513..468010 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S62_RS02600 (E3S62_02600) - 468107..468253 (+) 147 WP_001789879.1 hypothetical protein -
  E3S62_RS02605 (E3S62_02605) - 468243..468767 (+) 525 WP_001015120.1 shikimate kinase -
  E3S62_RS02610 (E3S62_02610) gcvT 468926..470017 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S62_RS02615 (E3S62_02615) gcvPA 470037..471383 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17117.24 Da        Isoelectric Point: 10.2449

>NTDB_id=416837 E3S62_RS02585 WP_160199701.1 466863..467309(+) (comGD) [Staphylococcus aureus strain UP_1097]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYENL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=416837 E3S62_RS02585 WP_160199701.1 466863..467309(+) (comGD) [Staphylococcus aureus strain UP_1097]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAATCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment