Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3S81_RS02710 Genome accession   NZ_CP047794
Coordinates   493675..494121 (+) Length   148 a.a.
NCBI ID   WP_072357807.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_551     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488675..499121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S81_RS02675 (E3S81_02675) - 489169..489372 (+) 204 WP_000087561.1 YqgQ family protein -
  E3S81_RS02680 (E3S81_02680) - 489369..490355 (+) 987 WP_000161315.1 ROK family glucokinase -
  E3S81_RS02685 (E3S81_02685) - 490355..490684 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S81_RS02690 (E3S81_02690) - 490681..491304 (+) 624 WP_047213494.1 MBL fold metallo-hydrolase -
  E3S81_RS02695 (E3S81_02695) comGA 491356..492330 (+) 975 WP_000697222.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S81_RS02700 (E3S81_02700) comGB 492302..493372 (+) 1071 WP_000776413.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S81_RS02705 (E3S81_02705) comGC 493386..493697 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S81_RS02710 (E3S81_02710) comGD 493675..494121 (+) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S81_RS02715 (E3S81_02715) comGE 494108..494407 (+) 300 WP_000844415.1 hypothetical protein Machinery gene
  E3S81_RS02720 (E3S81_02720) comGF 494325..494822 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S81_RS02725 (E3S81_02725) - 494919..495065 (+) 147 WP_001789879.1 hypothetical protein -
  E3S81_RS02730 (E3S81_02730) - 495055..495579 (+) 525 WP_001015120.1 shikimate kinase -
  E3S81_RS02735 (E3S81_02735) gcvT 495738..496829 (+) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S81_RS02740 (E3S81_02740) gcvPA 496849..498195 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=416461 E3S81_RS02710 WP_072357807.1 493675..494121(+) (comGD) [Staphylococcus aureus strain UP_551]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYFKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=416461 E3S81_RS02710 WP_072357807.1 493675..494121(+) (comGD) [Staphylococcus aureus strain UP_551]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATTTTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment