Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E3S88_RS03075 Genome accession   NZ_CP047792
Coordinates   619403..620389 (+) Length   328 a.a.
NCBI ID   WP_124780230.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_794     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 614403..625389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS03055 (E3S88_03055) - 614777..616393 (+) 1617 WP_398570810.1 peptide ABC transporter substrate-binding protein -
  E3S88_RS03060 (E3S88_03060) trpS 616513..617502 (-) 990 WP_000448933.1 tryptophan--tRNA ligase -
  E3S88_RS03065 (E3S88_03065) spxA 617797..618192 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  E3S88_RS03070 (E3S88_03070) mecA 618563..619282 (+) 720 WP_001217728.1 adaptor protein MecA -
  E3S88_RS03075 (E3S88_03075) coiA 619403..620389 (+) 987 WP_124780230.1 competence protein CoiA Machinery gene
  E3S88_RS03080 (E3S88_03080) pepF 620437..622245 (+) 1809 WP_124780232.1 oligoendopeptidase F -
  E3S88_RS03085 (E3S88_03085) yjbH 622705..623511 (-) 807 WP_160194516.1 protease adaptor protein YjbH -
  E3S88_RS03090 (E3S88_03090) - 623534..623899 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  E3S88_RS03095 (E3S88_03095) - 624003..624596 (-) 594 WP_070004248.1 CYTH domain-containing protein -
  E3S88_RS03100 (E3S88_03100) - 624782..625129 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38760.37 Da        Isoelectric Point: 9.7178

>NTDB_id=416369 E3S88_RS03075 WP_124780230.1 619403..620389(+) (coiA) [Staphylococcus aureus strain UP_794]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNTKISELFNEAPCDYHAVYKLPKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=416369 E3S88_RS03075 WP_124780230.1 619403..620389(+) (coiA) [Staphylococcus aureus strain UP_794]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATACCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTACCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTATTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.341

100

0.963
  coiA Staphylococcus aureus MW2

96.341

100

0.963

Multiple sequence alignment