Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H7795_RS08680 Genome accession   NZ_CP060641
Coordinates   1760187..1760783 (-) Length   198 a.a.
NCBI ID   WP_002982180.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1755187..1765783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7795_RS08660 (H7795_08625) spx 1756363..1756761 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  H7795_RS08665 (H7795_08630) recA 1757052..1758188 (-) 1137 WP_023612663.1 recombinase RecA Machinery gene
  H7795_RS08670 (H7795_08635) cinA 1758277..1759548 (-) 1272 WP_023612670.1 competence/damage-inducible protein A Machinery gene
  H7795_RS08675 (H7795_08640) - 1759617..1760177 (-) 561 WP_023612646.1 DNA-3-methyladenine glycosylase I -
  H7795_RS08680 (H7795_08645) ruvA 1760187..1760783 (-) 597 WP_002982180.1 Holliday junction branch migration protein RuvA Machinery gene
  H7795_RS08685 (H7795_08650) - 1760785..1762005 (-) 1221 WP_002992187.1 MDR family MFS transporter -
  H7795_RS08690 (H7795_08655) hexB 1762016..1763998 (-) 1983 WP_023612647.1 DNA mismatch repair endonuclease MutL Machinery gene
  H7795_RS08695 (H7795_08660) - 1764093..1765244 (-) 1152 WP_023612650.1 tyrosine-type recombinase/integrase -
  H7795_RS08700 (H7795_08665) - 1765566..1765709 (+) 144 WP_011185066.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=415833 H7795_RS08680 WP_002982180.1 1760187..1760783(-) (ruvA) [Streptococcus pyogenes strain TSPY210]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=415833 H7795_RS08680 WP_002982180.1 1760187..1760783(-) (ruvA) [Streptococcus pyogenes strain TSPY210]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAGACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424

Multiple sequence alignment