Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3T16_RS02390 Genome accession   NZ_CP047777
Coordinates   445971..446417 (+) Length   148 a.a.
NCBI ID   WP_160177508.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1632     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440971..451417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T16_RS02355 (E3T16_02355) - 441465..441668 (+) 204 WP_000087561.1 YqgQ family protein -
  E3T16_RS02360 (E3T16_02360) - 441665..442651 (+) 987 WP_000161311.1 ROK family glucokinase -
  E3T16_RS02365 (E3T16_02365) - 442651..442980 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3T16_RS02370 (E3T16_02370) - 442977..443600 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3T16_RS02375 (E3T16_02375) comGA 443652..444626 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  E3T16_RS02380 (E3T16_02380) comGB 444598..445668 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3T16_RS02385 (E3T16_02385) comGC 445682..445993 (+) 312 WP_160177506.1 competence type IV pilus major pilin ComGC Machinery gene
  E3T16_RS02390 (E3T16_02390) comGD 445971..446417 (+) 447 WP_160177508.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3T16_RS02395 (E3T16_02395) comGE 446404..446703 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  E3T16_RS02400 (E3T16_02400) comGF 446621..447118 (+) 498 WP_029650985.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3T16_RS02405 (E3T16_02405) - 447215..447361 (+) 147 WP_001792109.1 hypothetical protein -
  E3T16_RS02410 (E3T16_02410) - 447351..447875 (+) 525 WP_001015120.1 shikimate kinase -
  E3T16_RS02415 (E3T16_02415) gcvT 448034..449125 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  E3T16_RS02420 (E3T16_02420) gcvPA 449145..450491 (+) 1347 WP_160177510.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17164.39 Da        Isoelectric Point: 10.5013

>NTDB_id=415748 E3T16_RS02390 WP_160177508.1 445971..446417(+) (comGD) [Staphylococcus aureus strain UP_1632]
MKKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=415748 E3T16_RS02390 WP_160177508.1 445971..446417(+) (comGD) [Staphylococcus aureus strain UP_1632]
ATGAAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment