Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H7796_RS08025 Genome accession   NZ_CP060640
Coordinates   1668323..1668919 (-) Length   198 a.a.
NCBI ID   WP_020905574.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY764     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1663323..1673919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7796_RS07990 (H7796_07995) - 1663382..1663687 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  H7796_RS07995 (H7796_08000) ruvX 1663699..1664118 (-) 420 WP_020905573.1 Holliday junction resolvase RuvX -
  H7796_RS08000 (H7796_08005) - 1664115..1664384 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  H7796_RS08005 (H7796_08010) spx 1664499..1664897 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  H7796_RS08010 (H7796_08015) recA 1665188..1666324 (-) 1137 WP_002992179.1 recombinase RecA -
  H7796_RS08015 (H7796_08020) cinA 1666413..1667684 (-) 1272 WP_011285266.1 competence/damage-inducible protein A Machinery gene
  H7796_RS08020 (H7796_08025) - 1667753..1668313 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  H7796_RS08025 (H7796_08030) ruvA 1668323..1668919 (-) 597 WP_020905574.1 Holliday junction branch migration protein RuvA Machinery gene
  H7796_RS08030 (H7796_08035) - 1668921..1670141 (-) 1221 Protein_1534 MDR family MFS transporter -
  H7796_RS08035 (H7796_08040) hexB 1670152..1672134 (-) 1983 WP_228631369.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21951.33 Da        Isoelectric Point: 6.4963

>NTDB_id=415737 H7796_RS08025 WP_020905574.1 1668323..1668919(-) (ruvA) [Streptococcus pyogenes strain TSPY764]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAKELKKIRAFFEETSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=415737 H7796_RS08025 WP_020905574.1 1668323..1668919(-) (ruvA) [Streptococcus pyogenes strain TSPY764]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGAGACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.482

99.495

0.652
  ruvA Streptococcus pneumoniae R6

65.482

99.495

0.652
  ruvA Streptococcus pneumoniae D39

65.482

99.495

0.652
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424