Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H7797_RS09490 Genome accession   NZ_CP060639
Coordinates   1902016..1902612 (-) Length   198 a.a.
NCBI ID   WP_038434336.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897016..1907612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7797_RS09455 (H7797_09425) - 1897073..1897378 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  H7797_RS09460 (H7797_09430) ruvX 1897390..1897809 (-) 420 WP_111693462.1 Holliday junction resolvase RuvX -
  H7797_RS09465 (H7797_09435) - 1897806..1898075 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  H7797_RS09470 (H7797_09440) spx 1898192..1898590 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  H7797_RS09475 (H7797_09445) recA 1898881..1900017 (-) 1137 WP_023612576.1 recombinase RecA Machinery gene
  H7797_RS09480 (H7797_09450) cinA 1900106..1901377 (-) 1272 WP_111693463.1 competence/damage-inducible protein A Machinery gene
  H7797_RS09485 (H7797_09455) - 1901446..1902006 (-) 561 WP_111693464.1 DNA-3-methyladenine glycosylase I -
  H7797_RS09490 (H7797_09460) ruvA 1902016..1902612 (-) 597 WP_038434336.1 Holliday junction branch migration protein RuvA Machinery gene
  H7797_RS09495 (H7797_09465) - 1902614..1903834 (-) 1221 WP_032461237.1 MDR family MFS transporter -
  H7797_RS09500 (H7797_09470) hexB 1903845..1905827 (-) 1983 WP_111693465.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21834.16 Da        Isoelectric Point: 6.4948

>NTDB_id=415643 H7797_RS09490 WP_038434336.1 1902016..1902612(-) (ruvA) [Streptococcus pyogenes strain TSPY153]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=415643 H7797_RS09490 WP_038434336.1 1902016..1902612(-) (ruvA) [Streptococcus pyogenes strain TSPY153]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.414