Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RUNSL_RS22595 | Genome accession | NC_015703 |
| Coordinates | 5320228..5320704 (+) | Length | 158 a.a. |
| NCBI ID | WP_013930222.1 | Uniprot ID | A0A7U3ZPE8 |
| Organism | Runella slithyformis DSM 19594 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5315228..5325704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RUNSL_RS22575 (Runsl_4606) | - | 5315802..5317361 (-) | 1560 | WP_013930216.1 | Rne/Rng family ribonuclease | - |
| RUNSL_RS22580 (Runsl_4608) | - | 5317674..5318522 (-) | 849 | WP_013930218.1 | tetratricopeptide repeat protein | - |
| RUNSL_RS22585 (Runsl_4609) | - | 5318563..5318847 (-) | 285 | WP_013930219.1 | HU family DNA-binding protein | - |
| RUNSL_RS22590 (Runsl_4610) | mutY | 5319021..5320082 (+) | 1062 | WP_013930220.1 | A/G-specific adenine glycosylase | - |
| RUNSL_RS22595 (Runsl_4612) | ssb | 5320228..5320704 (+) | 477 | WP_013930222.1 | single-stranded DNA-binding protein | Machinery gene |
| RUNSL_RS22600 (Runsl_4613) | - | 5320940..5321323 (+) | 384 | WP_013930223.1 | VOC family protein | - |
| RUNSL_RS22605 (Runsl_4614) | msrB | 5321340..5321816 (-) | 477 | WP_013930224.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
| RUNSL_RS22610 (Runsl_4615) | - | 5321890..5322654 (+) | 765 | WP_013930225.1 | SDR family oxidoreductase | - |
| RUNSL_RS22615 (Runsl_4616) | - | 5322759..5323979 (+) | 1221 | WP_013930226.1 | sugar MFS transporter | - |
| RUNSL_RS22620 (Runsl_4617) | - | 5324047..5325132 (+) | 1086 | WP_041341458.1 | mevalonate kinase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17199.93 Da Isoelectric Point: 5.8050
>NTDB_id=41555 RUNSL_RS22595 WP_013930222.1 5320228..5320704(+) (ssb) [Runella slithyformis DSM 19594]
MAGVNKVILLGNLGSDPEVRHLENGSAVARFNIATSEAYTNRSGERVEQTEWHRIELWDNLAKIAEQYLRKGNTVYIEGK
LRTETWTDKEGKQREGKTVRANTMQLVGGRNSGGESNDSYTQSQPAAQAQASRPASAPKPAQPISADLGGSGDDDLPF
MAGVNKVILLGNLGSDPEVRHLENGSAVARFNIATSEAYTNRSGERVEQTEWHRIELWDNLAKIAEQYLRKGNTVYIEGK
LRTETWTDKEGKQREGKTVRANTMQLVGGRNSGGESNDSYTQSQPAAQAQASRPASAPKPAQPISADLGGSGDDDLPF
Nucleotide
Download Length: 477 bp
>NTDB_id=41555 RUNSL_RS22595 WP_013930222.1 5320228..5320704(+) (ssb) [Runella slithyformis DSM 19594]
ATGGCTGGAGTAAACAAAGTAATTCTATTGGGTAATTTGGGCAGCGACCCCGAAGTGCGTCACCTGGAAAATGGCTCAGC
AGTGGCTCGCTTCAATATTGCCACTTCAGAAGCCTACACCAATCGCAGCGGCGAACGTGTAGAACAGACAGAATGGCACC
GAATTGAACTGTGGGACAACTTGGCTAAGATCGCCGAGCAATACCTTCGTAAGGGCAATACCGTCTATATTGAAGGAAAA
TTACGCACGGAAACCTGGACGGATAAAGAAGGAAAACAACGGGAAGGAAAAACCGTAAGAGCAAATACGATGCAATTGGT
AGGCGGACGCAACAGCGGAGGTGAAAGTAACGATTCATACACTCAATCTCAGCCCGCGGCCCAGGCGCAGGCCAGCCGCC
CCGCTTCCGCTCCAAAACCTGCCCAACCTATTTCGGCAGACCTCGGGGGAAGCGGTGATGATGATTTACCCTTCTAA
ATGGCTGGAGTAAACAAAGTAATTCTATTGGGTAATTTGGGCAGCGACCCCGAAGTGCGTCACCTGGAAAATGGCTCAGC
AGTGGCTCGCTTCAATATTGCCACTTCAGAAGCCTACACCAATCGCAGCGGCGAACGTGTAGAACAGACAGAATGGCACC
GAATTGAACTGTGGGACAACTTGGCTAAGATCGCCGAGCAATACCTTCGTAAGGGCAATACCGTCTATATTGAAGGAAAA
TTACGCACGGAAACCTGGACGGATAAAGAAGGAAAACAACGGGAAGGAAAAACCGTAAGAGCAAATACGATGCAATTGGT
AGGCGGACGCAACAGCGGAGGTGAAAGTAACGATTCATACACTCAATCTCAGCCCGCGGCCCAGGCGCAGGCCAGCCGCC
CCGCTTCCGCTCCAAAACCTGCCCAACCTATTTCGGCAGACCTCGGGGGAAGCGGTGATGATGATTTACCCTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria meningitidis MC58 |
45.93 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
44.767 |
100 |
0.487 |
| ssb | Vibrio cholerae strain A1552 |
42.775 |
100 |
0.468 |
| ssb | Glaesserella parasuis strain SC1401 |
40.331 |
100 |
0.462 |