Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NRG857_RS13185 Genome accession   NC_017634
Coordinates   2724130..2724867 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O83:H1 str. NRG 857C     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2719130..2729867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG857_RS13170 (NRG857_12885) clpC 2719584..2722157 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  NRG857_RS13175 (NRG857_12890) yfiH 2722287..2723018 (-) 732 WP_000040160.1 purine nucleoside phosphorylase YfiH -
  NRG857_RS13180 (NRG857_12895) rluD 2723015..2723995 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NRG857_RS13185 (NRG857_12900) comL 2724130..2724867 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  NRG857_RS13190 (NRG857_12905) raiA 2725138..2725479 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  NRG857_RS13195 pheL 2725583..2725630 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  NRG857_RS13200 (NRG857_12910) pheA 2725729..2726889 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  NRG857_RS13205 (NRG857_12915) tyrA 2726932..2728053 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  NRG857_RS13210 (NRG857_12920) aroF 2728064..2729134 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  NRG857_RS13215 (NRG857_12925) yfiL 2729344..2729709 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=41555 NRG857_RS13185 WP_000197686.1 2724130..2724867(+) (comL) [Escherichia coli O83:H1 str. NRG 857C]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=41555 NRG857_RS13185 WP_000197686.1 2724130..2724867(+) (comL) [Escherichia coli O83:H1 str. NRG 857C]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment