Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RUNSL_RS18710 Genome accession   NC_015703
Coordinates   4412166..4413533 (-) Length   455 a.a.
NCBI ID   WP_013929485.1    Uniprot ID   A0A7U3ZMY1
Organism   Runella slithyformis DSM 19594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4407166..4418533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUNSL_RS18690 (Runsl_3820) - 4407584..4408831 (+) 1248 WP_013929481.1 sensor histidine kinase KdpD -
  RUNSL_RS18695 (Runsl_3821) - 4408931..4409629 (+) 699 WP_013929482.1 response regulator transcription factor -
  RUNSL_RS18700 (Runsl_3822) - 4409635..4410513 (-) 879 WP_013929483.1 AraC family transcriptional regulator -
  RUNSL_RS18705 (Runsl_3823) - 4410729..4412162 (+) 1434 WP_013929484.1 arabinose isomerase -
  RUNSL_RS18710 (Runsl_3824) radA 4412166..4413533 (-) 1368 WP_013929485.1 DNA repair protein RadA Machinery gene
  RUNSL_RS18715 (Runsl_3825) - 4413731..4414456 (-) 726 WP_013929486.1 SDR family oxidoreductase -
  RUNSL_RS18720 (Runsl_3826) - 4414647..4415306 (+) 660 WP_013929487.1 ABC transporter ATP-binding protein -
  RUNSL_RS18725 (Runsl_3827) - 4415431..4416879 (-) 1449 WP_013929488.1 ATP-binding protein -
  RUNSL_RS18730 (Runsl_3828) - 4417342..4417773 (-) 432 WP_013929489.1 hypothetical protein -
  RUNSL_RS18735 (Runsl_3829) - 4417766..4418221 (-) 456 WP_013929490.1 DUF6326 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50015.62 Da        Isoelectric Point: 6.3738

>NTDB_id=41554 RUNSL_RS18710 WP_013929485.1 4412166..4413533(-) (radA) [Runella slithyformis DSM 19594]
MAKVKTAYFCQSCGHQSPKWLGRCPSCGEWNTLVEEVLEKEDKKGPLAQWKSVSLASKPKAIVEIKYEEEPRIVTIDAEL
NRVLGGGIVLGSLVLIGGEPGIGKSTLMLQIALTLTQRVLYVSGEESEQQIKMRAERLTSKNHNCFILTETSTDNIFRQI
EEFNPDVLIIDSIQTMQSSLIESGAGSVSQVRQCASELMKYAKESGVPVFMIGHITKDGSLAGPKTLEHMVDTVLQFEGD
RHTTYRILRTTKNRFGSTSELGIYEMLGTGLRQVTNPSEILISQREEQLSGITIGSMLEGNRPLMIEIQSLVSVANYGTP
QRSSTGFDNKRLQMLLAVLEKRGGFRLGTQDVFLNVAGGLRVEDPAIDLAVVTSIASSFEDGFVPPSVCFAGEVGLGGEV
RAVSRIEGRIAEAEKLGFKKIFISKYNTKGVIFKNYDIKIIPVAKLDEVFGELLR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=41554 RUNSL_RS18710 WP_013929485.1 4412166..4413533(-) (radA) [Runella slithyformis DSM 19594]
ATGGCTAAAGTCAAAACCGCTTATTTTTGTCAAAGTTGTGGTCATCAGTCACCCAAATGGCTCGGACGATGCCCCTCCTG
CGGCGAATGGAACACCTTGGTAGAAGAAGTTCTCGAAAAAGAAGATAAAAAAGGGCCCTTGGCGCAGTGGAAATCGGTGA
GCTTGGCCTCCAAACCCAAAGCCATTGTCGAAATAAAATACGAAGAAGAACCGCGTATTGTCACGATAGATGCCGAGCTT
AACCGCGTCCTGGGCGGCGGTATCGTGCTGGGTTCGTTGGTGCTCATCGGCGGGGAGCCGGGCATCGGAAAATCGACACT
GATGCTGCAAATTGCGCTGACGCTCACCCAACGCGTGCTGTACGTGTCGGGGGAGGAAAGCGAGCAGCAGATCAAGATGC
GCGCCGAACGGCTTACGTCCAAAAACCACAATTGCTTTATTCTAACGGAAACGTCGACCGACAATATCTTCCGCCAAATC
GAAGAATTCAATCCGGATGTGCTGATCATTGACTCCATCCAAACCATGCAATCGTCGCTCATCGAATCGGGCGCGGGCAG
CGTATCTCAGGTGCGTCAGTGCGCGTCGGAATTGATGAAATACGCCAAAGAAAGCGGCGTGCCGGTATTTATGATCGGAC
ACATTACCAAAGACGGCAGCCTTGCCGGGCCCAAAACCCTGGAGCACATGGTCGATACCGTGCTTCAGTTTGAAGGCGAC
CGCCACACCACCTACCGAATCCTGCGTACCACCAAAAACCGCTTCGGAAGCACCTCAGAACTGGGGATTTACGAAATGCT
CGGGACCGGCCTGCGTCAGGTGACCAACCCCTCGGAGATATTGATCTCGCAGCGCGAAGAGCAATTGAGCGGTATTACCA
TCGGCTCCATGCTCGAAGGCAACCGGCCGCTGATGATCGAGATACAGTCGCTGGTAAGCGTAGCCAACTACGGAACCCCG
CAGCGCAGCAGCACGGGATTTGACAACAAACGCCTTCAGATGCTGTTGGCCGTATTGGAAAAACGCGGCGGTTTTCGCTT
AGGTACCCAAGACGTTTTTCTCAACGTGGCGGGTGGCCTGCGCGTAGAAGACCCCGCCATTGATTTAGCCGTCGTGACCT
CTATTGCCTCATCCTTTGAAGATGGTTTTGTGCCGCCTTCGGTGTGTTTTGCGGGAGAAGTGGGCCTGGGCGGGGAGGTT
CGTGCCGTAAGCCGCATCGAAGGGCGCATTGCCGAAGCGGAAAAACTGGGCTTTAAGAAAATATTTATTTCCAAATACAA
CACCAAAGGGGTGATCTTCAAGAACTACGACATTAAGATCATCCCCGTCGCGAAGTTGGATGAGGTATTTGGGGAATTGC
TGCGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

AAA domain (AAA_25)

(77-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3ZMY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.863

99.56

0.536
  radA Streptococcus mitis SK321

49.781

100

0.499
  radA Streptococcus mitis NCTC 12261

49.781

100

0.499
  radA Streptococcus pneumoniae TIGR4

49.561

100

0.497
  radA Streptococcus pneumoniae R6

49.561

100

0.497
  radA Streptococcus pneumoniae Rx1

49.561

100

0.497
  radA Streptococcus pneumoniae D39

49.561

100

0.497

Multiple sequence alignment