Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FX988_RS17765 | Genome accession | NZ_CP047656 |
| Coordinates | 4181938..4182834 (+) | Length | 298 a.a. |
| NCBI ID | WP_160181426.1 | Uniprot ID | A0A857JPC3 |
| Organism | Paraglaciecola mesophila strain GPM4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4176938..4187834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FX988_RS17735 (FX988_03581) | ampE | 4176958..4177770 (-) | 813 | WP_160181421.1 | beta-lactamase regulator AmpE | - |
| FX988_RS17740 (FX988_03582) | ampD | 4177809..4178396 (-) | 588 | WP_160181422.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FX988_RS17745 (FX988_03583) | - | 4178463..4178999 (+) | 537 | WP_254700656.1 | TIGR02281 family clan AA aspartic protease | - |
| FX988_RS17750 (FX988_03584) | nadC | 4179067..4179909 (+) | 843 | WP_160181423.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FX988_RS17755 (FX988_03585) | - | 4180115..4180561 (+) | 447 | WP_160181424.1 | pilin | - |
| FX988_RS17760 (FX988_03586) | pilC | 4180627..4181832 (+) | 1206 | WP_160181425.1 | type II secretion system F family protein | Machinery gene |
| FX988_RS17765 (FX988_03587) | pilD | 4181938..4182834 (+) | 897 | WP_160181426.1 | prepilin peptidase | Machinery gene |
| FX988_RS17770 (FX988_03588) | coaE | 4182831..4183445 (+) | 615 | WP_160181427.1 | dephospho-CoA kinase | - |
| FX988_RS17775 (FX988_03589) | zapD | 4183580..4184332 (+) | 753 | WP_160181428.1 | cell division protein ZapD | - |
| FX988_RS17780 (FX988_03590) | yacG | 4184367..4184597 (+) | 231 | WP_160181429.1 | DNA gyrase inhibitor YacG | - |
| FX988_RS17785 (FX988_03591) | - | 4184750..4185493 (+) | 744 | WP_160181430.1 | glutathione peroxidase | - |
| FX988_RS17790 (FX988_03592) | - | 4185633..4186670 (+) | 1038 | WP_412761911.1 | alpha/beta hydrolase | - |
Sequence
Protein
Download Length: 298 a.a. Molecular weight: 33242.27 Da Isoelectric Point: 5.6545
>NTDB_id=415055 FX988_RS17765 WP_160181426.1 4181938..4182834(+) (pilD) [Paraglaciecola mesophila strain GPM4]
MDAIFQLMADSPLFFLSFVFIVSLMVGSFLNVVIYRLPVMMERSWKADFQAHFETDVSTLGSNTDQPESTPFNLIKPDST
CPKCQHKIRAWENIPVISWLLLRGKCSQCKNAISIRYPLIELGTALCSVWIAWHFGYSWSALAGIVMTWILVALIFIDID
TMLLPDQLTLPLLWMGLLFSIVNPAVTTADSIIGASVGYLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWMGWQYLAI
VVLMSSLVGAIIGISILSLQGKDKGQAIPFGPYLAIAGWLTLLYGDWISSQYWQWVGL
MDAIFQLMADSPLFFLSFVFIVSLMVGSFLNVVIYRLPVMMERSWKADFQAHFETDVSTLGSNTDQPESTPFNLIKPDST
CPKCQHKIRAWENIPVISWLLLRGKCSQCKNAISIRYPLIELGTALCSVWIAWHFGYSWSALAGIVMTWILVALIFIDID
TMLLPDQLTLPLLWMGLLFSIVNPAVTTADSIIGASVGYLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWMGWQYLAI
VVLMSSLVGAIIGISILSLQGKDKGQAIPFGPYLAIAGWLTLLYGDWISSQYWQWVGL
Nucleotide
Download Length: 897 bp
>NTDB_id=415055 FX988_RS17765 WP_160181426.1 4181938..4182834(+) (pilD) [Paraglaciecola mesophila strain GPM4]
ATGGATGCTATTTTTCAGCTGATGGCTGACTCGCCACTATTTTTTCTCAGTTTTGTGTTCATCGTCAGTTTGATGGTAGG
CAGCTTTTTGAACGTCGTGATCTATCGTTTACCCGTTATGATGGAACGAAGCTGGAAAGCGGACTTTCAAGCGCATTTTG
AAACGGATGTATCTACGTTAGGCTCGAACACTGACCAGCCTGAGTCAACCCCCTTTAACCTGATTAAACCTGACTCTACC
TGTCCTAAGTGCCAGCATAAAATTCGTGCGTGGGAAAATATCCCAGTAATAAGTTGGCTGCTGCTGCGAGGAAAATGCAG
TCAATGTAAAAATGCTATTTCTATTCGTTACCCGCTTATCGAACTGGGTACAGCGCTTTGCTCAGTATGGATTGCTTGGC
ACTTTGGCTATTCTTGGTCTGCGCTAGCGGGCATTGTGATGACTTGGATCTTAGTGGCGCTGATTTTTATCGATATCGAT
ACCATGCTATTGCCGGACCAACTTACCTTACCGCTACTGTGGATGGGGTTACTGTTTAGTATAGTGAATCCTGCCGTAAC
CACTGCCGACTCTATCATTGGGGCAAGTGTTGGGTACTTGAGTCTTTGGTCTGTGTACTGGGCGTTTAAGCTACTTACGG
GCAAAGAGGGCATGGGCTATGGTGACTTTAAGTTGCTGGCTGCACTGGGCGCGTGGATGGGTTGGCAGTATTTAGCGATT
GTGGTGTTAATGTCCTCTCTGGTTGGGGCAATTATCGGCATAAGTATATTGAGTTTGCAGGGCAAGGATAAAGGGCAGGC
GATCCCGTTCGGTCCTTATTTAGCGATTGCGGGGTGGTTGACCTTGCTTTACGGGGATTGGATTTCGAGCCAATATTGGC
AGTGGGTAGGATTATGA
ATGGATGCTATTTTTCAGCTGATGGCTGACTCGCCACTATTTTTTCTCAGTTTTGTGTTCATCGTCAGTTTGATGGTAGG
CAGCTTTTTGAACGTCGTGATCTATCGTTTACCCGTTATGATGGAACGAAGCTGGAAAGCGGACTTTCAAGCGCATTTTG
AAACGGATGTATCTACGTTAGGCTCGAACACTGACCAGCCTGAGTCAACCCCCTTTAACCTGATTAAACCTGACTCTACC
TGTCCTAAGTGCCAGCATAAAATTCGTGCGTGGGAAAATATCCCAGTAATAAGTTGGCTGCTGCTGCGAGGAAAATGCAG
TCAATGTAAAAATGCTATTTCTATTCGTTACCCGCTTATCGAACTGGGTACAGCGCTTTGCTCAGTATGGATTGCTTGGC
ACTTTGGCTATTCTTGGTCTGCGCTAGCGGGCATTGTGATGACTTGGATCTTAGTGGCGCTGATTTTTATCGATATCGAT
ACCATGCTATTGCCGGACCAACTTACCTTACCGCTACTGTGGATGGGGTTACTGTTTAGTATAGTGAATCCTGCCGTAAC
CACTGCCGACTCTATCATTGGGGCAAGTGTTGGGTACTTGAGTCTTTGGTCTGTGTACTGGGCGTTTAAGCTACTTACGG
GCAAAGAGGGCATGGGCTATGGTGACTTTAAGTTGCTGGCTGCACTGGGCGCGTGGATGGGTTGGCAGTATTTAGCGATT
GTGGTGTTAATGTCCTCTCTGGTTGGGGCAATTATCGGCATAAGTATATTGAGTTTGCAGGGCAAGGATAAAGGGCAGGC
GATCCCGTTCGGTCCTTATTTAGCGATTGCGGGGTGGTTGACCTTGCTTTACGGGGATTGGATTTCGAGCCAATATTGGC
AGTGGGTAGGATTATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.762 |
98.658 |
0.54 |
| pilD | Vibrio campbellii strain DS40M4 |
54.77 |
94.966 |
0.52 |
| pilD | Acinetobacter baumannii D1279779 |
53.261 |
92.617 |
0.493 |
| pilD | Acinetobacter nosocomialis M2 |
52.536 |
92.617 |
0.487 |
| pilD | Neisseria gonorrhoeae MS11 |
47.872 |
94.631 |
0.453 |