Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GNE05_RS18080 Genome accession   NZ_CP047644
Coordinates   3644486..3645175 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. AM1(2019)     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3639486..3650175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS18045 (GNE05_18045) - 3639684..3640166 (-) 483 WP_031379255.1 flagellar protein FlgN -
  GNE05_RS18050 (GNE05_18050) flgM 3640181..3640447 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GNE05_RS18055 (GNE05_18055) - 3640517..3640936 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  GNE05_RS18060 (GNE05_18060) comFC 3641010..3641699 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  GNE05_RS18065 (GNE05_18065) - 3641705..3641989 (-) 285 WP_003151389.1 competence protein ComFB -
  GNE05_RS18070 (GNE05_18070) comFA 3642047..3643432 (-) 1386 WP_160183055.1 DEAD/DEAH box helicase Machinery gene
  GNE05_RS18075 (GNE05_18075) - 3643540..3644388 (-) 849 WP_072177036.1 DegV family protein -
  GNE05_RS18080 (GNE05_18080) degU 3644486..3645175 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GNE05_RS18085 (GNE05_18085) degS 3645252..3646415 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GNE05_RS18090 (GNE05_18090) - 3646638..3647285 (+) 648 WP_007614107.1 YigZ family protein -
  GNE05_RS18095 (GNE05_18095) - 3647290..3648477 (+) 1188 WP_160183056.1 LCP family protein -
  GNE05_RS18100 (GNE05_18100) - 3648576..3649652 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=414903 GNE05_RS18080 WP_003219701.1 3644486..3645175(-) (degU) [Bacillus sp. AM1(2019)]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=414903 GNE05_RS18080 WP_003219701.1 3644486..3645175(-) (degU) [Bacillus sp. AM1(2019)]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCGTTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment