Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GNE05_RS18070 Genome accession   NZ_CP047644
Coordinates   3642047..3643432 (-) Length   461 a.a.
NCBI ID   WP_160183055.1    Uniprot ID   -
Organism   Bacillus sp. AM1(2019)     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637047..3648432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS18035 (GNE05_18035) flgL 3637222..3638139 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  GNE05_RS18040 (GNE05_18040) flgK 3638151..3639668 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  GNE05_RS18045 (GNE05_18045) - 3639684..3640166 (-) 483 WP_031379255.1 flagellar protein FlgN -
  GNE05_RS18050 (GNE05_18050) flgM 3640181..3640447 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GNE05_RS18055 (GNE05_18055) - 3640517..3640936 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  GNE05_RS18060 (GNE05_18060) comFC 3641010..3641699 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  GNE05_RS18065 (GNE05_18065) - 3641705..3641989 (-) 285 WP_003151389.1 competence protein ComFB -
  GNE05_RS18070 (GNE05_18070) comFA 3642047..3643432 (-) 1386 WP_160183055.1 DEAD/DEAH box helicase Machinery gene
  GNE05_RS18075 (GNE05_18075) - 3643540..3644388 (-) 849 WP_072177036.1 DegV family protein -
  GNE05_RS18080 (GNE05_18080) degU 3644486..3645175 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GNE05_RS18085 (GNE05_18085) degS 3645252..3646415 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GNE05_RS18090 (GNE05_18090) - 3646638..3647285 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52625.03 Da        Isoelectric Point: 10.2278

>NTDB_id=414902 GNE05_RS18070 WP_160183055.1 3642047..3643432(-) (comFA) [Bacillus sp. AM1(2019)]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGHLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=414902 GNE05_RS18070 WP_160183055.1 3642047..3643432(-) (comFA) [Bacillus sp. AM1(2019)]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCACCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTGTTCGTCCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAGCATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment