Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H7X56_RS09220 Genome accession   NZ_CP060269
Coordinates   1813453..1814049 (-) Length   198 a.a.
NCBI ID   WP_002992186.1    Uniprot ID   P0DF49
Organism   Streptococcus pyogenes strain SP1380     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808453..1819049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X56_RS09185 (H7X56_09130) - 1808514..1808819 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  H7X56_RS09190 (H7X56_09135) ruvX 1808831..1809250 (-) 420 WP_010922752.1 Holliday junction resolvase RuvX -
  H7X56_RS09195 (H7X56_09140) - 1809247..1809516 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  H7X56_RS09200 (H7X56_09145) spx 1809629..1810027 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  H7X56_RS09205 (H7X56_09150) recA 1810318..1811454 (-) 1137 WP_010922753.1 recombinase RecA Machinery gene
  H7X56_RS09210 (H7X56_09155) cinA 1811543..1812814 (-) 1272 WP_010922754.1 competence/damage-inducible protein A Machinery gene
  H7X56_RS09215 (H7X56_09160) - 1812883..1813443 (-) 561 WP_010922755.1 DNA-3-methyladenine glycosylase I -
  H7X56_RS09220 (H7X56_09165) ruvA 1813453..1814049 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA Machinery gene
  H7X56_RS09225 (H7X56_09170) - 1814051..1815271 (-) 1221 WP_010922756.1 MDR family MFS transporter -
  H7X56_RS09230 (H7X56_09175) hexB 1815282..1817264 (-) 1983 WP_010922757.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21879.26 Da        Isoelectric Point: 6.8838

>NTDB_id=414532 H7X56_RS09220 WP_002992186.1 1813453..1814049(-) (ruvA) [Streptococcus pyogenes strain SP1380]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=414532 H7X56_RS09220 WP_002992186.1 1813453..1814049(-) (ruvA) [Streptococcus pyogenes strain SP1380]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGGTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCTCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DF49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.419