Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GUJ28_RS04690 Genome accession   NZ_CP047576
Coordinates   950216..950845 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 94EC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 945216..955845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUJ28_RS04675 (GUJ28_04675) helD 945458..947512 (-) 2055 WP_000420536.1 DNA helicase IV -
  GUJ28_RS04680 (GUJ28_04680) yccF 947635..948081 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GUJ28_RS04685 (GUJ28_04685) yccS 948091..950253 (+) 2163 WP_000875020.1 YccS family putative transporter -
  GUJ28_RS04690 (GUJ28_04690) sxy/tfoX 950216..950845 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GUJ28_RS04695 (GUJ28_04695) sulA 951064..951573 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GUJ28_RS04700 (GUJ28_04700) ompA 951930..952970 (+) 1041 WP_000750416.1 porin OmpA -
  GUJ28_RS04705 (GUJ28_04705) matP 953046..953498 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GUJ28_RS04710 (GUJ28_04710) ycbZ 953684..955444 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=414273 GUJ28_RS04690 WP_000839153.1 950216..950845(-) (sxy/tfoX) [Escherichia coli strain 94EC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=414273 GUJ28_RS04690 WP_000839153.1 950216..950845(-) (sxy/tfoX) [Escherichia coli strain 94EC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment