Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   HMPREF0833_RS08625 Genome accession   NC_015678
Coordinates   1841688..1843664 (+) Length   658 a.a.
NCBI ID   WP_013904539.1    Uniprot ID   F8DH49
Organism   Streptococcus parasanguinis ATCC 15912     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836688..1848664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS08610 (HMPREF0833_11717) - 1838349..1839017 (+) 669 WP_003014188.1 fructose-6-phosphate aldolase -
  HMPREF0833_RS08615 (HMPREF0833_11718) - 1839033..1840124 (+) 1092 WP_013904537.1 glycerol dehydrogenase -
  HMPREF0833_RS08620 (HMPREF0833_11719) - 1840200..1841522 (-) 1323 WP_013904538.1 DUF1958 domain-containing protein -
  HMPREF0833_RS08625 (HMPREF0833_11720) amiA3 1841688..1843664 (+) 1977 WP_013904539.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF0833_RS08630 (HMPREF0833_11721) leuS 1843788..1846289 (+) 2502 WP_013904540.1 leucine--tRNA ligase -
  HMPREF0833_RS08635 (HMPREF0833_11722) - 1846465..1846878 (+) 414 WP_003018360.1 YjdF family protein -
  HMPREF0833_RS08640 (HMPREF0833_11723) - 1847204..1847635 (+) 432 WP_003018364.1 pyridoxamine 5'-phosphate oxidase family protein -
  HMPREF0833_RS08645 (HMPREF0833_11724) - 1847640..1848473 (+) 834 WP_013904541.1 Sir2 silent information regulator family NAD-dependent deacetylase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72815.82 Da        Isoelectric Point: 5.1295

>NTDB_id=41408 HMPREF0833_RS08625 WP_013904539.1 1841688..1843664(+) (amiA3) [Streptococcus parasanguinis ATCC 15912]
MNKGKVLLATSALLLSAGVLAACSGGKSSSSGGQTYSYVYTQDPDTLDYSISNKKSTSEFTGNAIDGLLEVDKYGNLIPS
LAKDWTVSKDGLTYTYKLRKGVKWMTSEGEEYGEVKAKDFVTGLKHAADKKSQAIYLVQKSVKGLDDYVSGKTSDFSTVG
VKAIDDYTVQYTLSQPESFWNSKTTMGILMPVNEEFLKSKGDDYGQGTSPSSILYCGPYLIKSITSKSSAILEKNPTYWD
ADNVKISKVKLTYYDGQDSESLIRGFDNGDYTVARVFPNGSNYKSVEKKHKDDIVFTDQGSSTYNLSFNIDRQAYEITKK
TTDAQKTSTKKAILNKDFRQAIMFAFNRKAYVAQTNGEAGANKVIRNTFTPPNFVQIDGQQFGDAVEKDLEAYGDEWKGV
SVADGKDTLYNPTKAKEEFAKAKADLQAQGVEFPIHLDLPTSSTYTEGIKQAQSFKQSVESTLGAENIVIDLNMISEDDL
QRVTYFAESASQQDWDLNNNLGWGPDYTDPSSYIDITSGKSGENANSYFGFDAGTDNAAAKAAGFDEYDQLIEDAQKENT
DVNKRYEKYAAAQAWLTDSALLIPIHSDGASPVVRKTVPYSAAFAWTGHKGQSFNYKYLEVQDKVVAAKDYDKAREQWKK
EKEKSNKKAQEELEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=41408 HMPREF0833_RS08625 WP_013904539.1 1841688..1843664(+) (amiA3) [Streptococcus parasanguinis ATCC 15912]
ATGAACAAAGGGAAGGTACTCTTAGCTACCAGCGCTCTGCTTTTATCAGCTGGTGTACTGGCAGCCTGCTCAGGAGGGAA
ATCTAGTAGCTCTGGTGGTCAGACCTATAGCTATGTCTATACCCAGGATCCGGATACACTGGATTACTCGATTTCCAATA
AAAAATCGACTTCCGAGTTTACAGGAAATGCGATAGATGGCTTGTTGGAAGTGGACAAGTACGGGAACTTGATCCCATCG
CTTGCTAAAGACTGGACTGTTTCCAAGGACGGCTTGACCTATACTTATAAACTCCGCAAAGGGGTCAAATGGATGACTTC
TGAAGGGGAAGAATATGGAGAAGTCAAGGCCAAAGACTTTGTCACAGGTCTCAAACACGCGGCAGATAAGAAATCACAAG
CGATTTACTTGGTCCAAAAATCTGTCAAAGGTTTGGATGATTATGTTTCAGGGAAAACATCCGATTTCTCAACTGTTGGA
GTAAAGGCTATTGATGATTATACCGTTCAATATACCTTGAGCCAACCAGAAAGTTTCTGGAATTCTAAGACTACAATGGG
GATCTTGATGCCGGTCAACGAAGAATTCCTGAAATCTAAAGGAGATGATTATGGCCAAGGAACTTCTCCGTCTAGTATCC
TCTACTGCGGTCCTTATTTGATCAAATCTATCACTTCTAAATCTTCTGCGATATTGGAAAAGAACCCAACATACTGGGAT
GCGGATAATGTTAAGATCAGTAAAGTGAAGTTGACCTATTATGATGGACAAGACTCAGAATCCTTGATTCGTGGGTTTGA
TAACGGCGACTATACAGTTGCCCGTGTTTTCCCAAATGGTTCCAACTATAAGAGTGTAGAGAAGAAGCACAAAGACGATA
TCGTCTTTACTGACCAAGGTTCATCTACCTACAACCTTTCCTTCAACATTGACCGTCAGGCTTATGAAATCACTAAGAAG
ACCACTGATGCTCAAAAGACTTCAACTAAGAAAGCAATCTTAAATAAAGACTTCCGTCAAGCCATTATGTTTGCCTTCAA
CCGCAAGGCTTATGTAGCGCAAACTAACGGGGAAGCGGGTGCCAATAAGGTTATCCGTAATACCTTTACGCCACCAAACT
TTGTCCAAATCGATGGCCAACAATTTGGTGATGCAGTAGAAAAAGACTTGGAAGCTTATGGGGATGAATGGAAAGGGGTC
TCTGTCGCAGATGGAAAAGACACCCTCTACAATCCAACCAAGGCCAAAGAAGAGTTTGCCAAAGCCAAGGCAGATTTGCA
GGCTCAAGGAGTTGAATTCCCAATTCATTTGGACCTTCCAACTTCTTCAACTTATACAGAAGGGATCAAACAAGCTCAAT
CCTTTAAACAGTCAGTTGAATCTACACTAGGAGCAGAAAATATTGTCATCGATTTGAATATGATTTCTGAAGATGATCTG
CAACGGGTGACTTACTTTGCTGAAAGTGCTTCGCAACAAGACTGGGATTTGAACAATAACTTGGGTTGGGGACCAGACTA
TACGGACCCATCTTCTTACATCGACATCACTAGTGGTAAATCCGGCGAAAACGCCAATTCTTACTTTGGATTCGATGCTG
GTACGGATAATGCAGCCGCAAAAGCAGCTGGCTTTGATGAGTACGATCAATTAATTGAAGACGCTCAAAAAGAAAACACC
GATGTCAACAAGCGTTATGAAAAATATGCTGCCGCTCAAGCTTGGTTGACCGATAGTGCCCTCTTGATTCCGATTCATTC
GGATGGAGCCTCTCCAGTCGTTCGTAAGACTGTACCATACTCTGCAGCCTTTGCATGGACAGGCCACAAGGGTCAATCCT
TCAACTACAAGTATTTAGAAGTTCAAGATAAGGTCGTAGCGGCTAAAGACTACGACAAAGCGCGTGAACAATGGAAGAAA
GAAAAAGAAAAATCCAATAAAAAAGCGCAAGAAGAACTTGAAAAGCATGTGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8DH49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.212

100

0.564
  amiA Streptococcus salivarius strain HSISS4

55.994

100

0.561
  amiA3 Streptococcus thermophilus LMG 18311

55.909

100

0.561

Multiple sequence alignment