Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HMPREF0833_RS03660 Genome accession   NC_015678
Coordinates   748165..750150 (-) Length   661 a.a.
NCBI ID   WP_003018146.1    Uniprot ID   -
Organism   Streptococcus parasanguinis ATCC 15912     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 743165..755150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS03650 (HMPREF0833_10728) trxA 744605..744919 (-) 315 WP_013903754.1 thioredoxin -
  HMPREF0833_RS03655 (HMPREF0833_10729) - 745017..748043 (-) 3027 WP_013903755.1 CocE/NonD family hydrolase -
  HMPREF0833_RS03660 (HMPREF0833_10730) amiA 748165..750150 (-) 1986 WP_003018146.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF0833_RS03665 (HMPREF0833_10731) - 750736..751773 (-) 1038 WP_013903757.1 M42 family metallopeptidase -
  HMPREF0833_RS03670 (HMPREF0833_10732) - 751837..752283 (-) 447 WP_013903758.1 NADAR family protein -
  HMPREF0833_RS03675 (HMPREF0833_10733) - 752270..752914 (-) 645 WP_013903759.1 hypothetical protein -
  HMPREF0833_RS03680 (HMPREF0833_10734) - 752948..753325 (-) 378 WP_013903760.1 hypothetical protein -
  HMPREF0833_RS10155 (HMPREF0833_10735) - 753350..754471 (-) 1122 WP_255309069.1 EndoU domain-containing protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73556.16 Da        Isoelectric Point: 5.3203

>NTDB_id=41376 HMPREF0833_RS03660 WP_003018146.1 748165..750150(-) (amiA) [Streptococcus parasanguinis ATCC 15912]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSNGQKFSYVYETEPENLNYITSGKAATHDITGNLIDGLFENDKYGNLI
PSLAKDWTVSQDGLTYTYKLRDDAKWYDSEGEEYADVTAKDFITGIKYAADNKSEMLYIIQDSIKGLNDYVSGKNKDFSA
VGVKAVDDHTLQITLNQPESYWNSKLTLGITFPVNEKFVKSKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMTKNENY
WDKDKVYISDVKLEFYDGQDQSKLAKSFGENALSLAKLFPTGSGYSEQAKEFKDEITYTPQDAASYVIGTNIDRQSYKHT
AKKTDEEKQSTKKALLNKDFRQAISFAFNREAYAAQLNGKDGASKIIRNLYIPPTFVQADGKTFGEMVKTQLDTYGDEWK
STKLDDGQNGLFDAKKAKEEFAKAKTALEAEGVKFPIHIDMPVDQTTPSRVQRTQSFKQSVEEALGKENVVIDIQMLSKE
DLQNVTLFAPNAAGEDWDLSDNVGWSPDYQDPSTYMDILKASSGENTKTFLGFDPSENNEAAKKVGLYDFEKMIKDAGAE
TQDVNKRYEKYAAAQAWLTDSALVIPTSSSTGRPFLTRIEPFSAPFAWTGGKGKDHVIYKGMKLQDKAVTTADYNKALEK
WQKEQAESNKKAQEDLKKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=41376 HMPREF0833_RS03660 WP_003018146.1 748165..750150(-) (amiA) [Streptococcus parasanguinis ATCC 15912]
ATGAAAAAAAGAAATGTCATTGCACTTGCGGGAGTTGCCCTCCTTTCAGCAGGTATCCTAGCCGCTTGTTCGGGTGGTTC
TAAATCATCTAGCTCAAGCAACGGTCAAAAATTCTCATATGTCTATGAGACTGAGCCAGAAAACCTAAACTATATCACAT
CTGGTAAAGCAGCAACCCACGATATCACAGGAAACTTGATTGATGGTTTGTTTGAAAATGACAAATACGGTAACTTGATT
CCATCTCTTGCAAAAGACTGGACAGTTTCGCAAGATGGCTTGACTTATACTTATAAACTTCGTGATGATGCTAAATGGTA
TGATTCAGAAGGCGAAGAGTATGCGGATGTAACAGCTAAAGATTTCATCACAGGGATCAAATATGCGGCTGATAACAAAT
CAGAAATGCTCTACATCATCCAAGATTCTATCAAAGGCTTGAATGACTACGTCAGTGGTAAAAATAAAGATTTCTCAGCT
GTAGGAGTAAAAGCAGTTGATGATCATACCCTTCAAATCACTTTGAACCAACCAGAATCTTACTGGAACTCTAAATTGAC
TCTTGGGATCACTTTCCCTGTCAACGAAAAATTCGTGAAATCAAAAGGGGATAAATTCGCCCAAGCAAGTGACACCAGCT
CTCTTCTTTACAATGGTCCATACATCTTGAAGAGCTTTACTTCTAAATCTTCTATCGAAATGACCAAGAATGAAAACTAC
TGGGATAAAGACAAGGTCTACATCTCAGATGTGAAATTGGAATTCTACGATGGACAAGACCAAAGTAAATTGGCCAAATC
ATTCGGTGAAAATGCTCTTAGCTTGGCAAAACTCTTCCCAACTGGATCTGGTTACTCAGAGCAAGCCAAAGAATTCAAAG
ACGAAATCACCTACACTCCTCAAGACGCAGCTTCTTATGTCATTGGTACCAACATCGACCGTCAATCATACAAACACACT
GCTAAGAAGACCGATGAGGAAAAACAATCTACTAAGAAAGCTCTCTTGAACAAGGACTTCCGTCAAGCGATCAGCTTTGC
CTTTAACCGTGAAGCGTATGCTGCTCAATTGAACGGAAAAGATGGAGCAAGCAAGATCATCCGTAACCTCTACATTCCAC
CAACATTTGTCCAAGCTGATGGTAAAACCTTCGGTGAAATGGTGAAAACACAATTGGATACCTACGGAGATGAGTGGAAA
TCTACTAAACTAGACGATGGTCAAAACGGTCTCTTCGATGCTAAGAAAGCGAAGGAAGAGTTTGCAAAAGCGAAGACTGC
CTTGGAAGCAGAAGGTGTGAAATTCCCAATTCACATCGATATGCCTGTGGACCAAACGACTCCATCAAGAGTTCAACGGA
CGCAATCTTTCAAACAATCAGTTGAAGAAGCGCTTGGTAAAGAAAATGTTGTCATCGATATCCAAATGCTTTCGAAAGAA
GACCTTCAAAATGTGACCCTCTTTGCACCAAATGCGGCTGGCGAAGACTGGGATCTCTCTGATAATGTTGGATGGAGCCC
TGACTACCAAGATCCATCAACTTACATGGATATCTTGAAAGCTTCATCTGGTGAAAATACTAAGACTTTCCTTGGATTTG
ACCCAAGTGAAAACAATGAAGCAGCTAAAAAAGTTGGTCTGTACGACTTTGAAAAGATGATCAAAGATGCTGGTGCAGAA
ACACAAGACGTCAACAAACGCTACGAAAAATATGCGGCAGCGCAAGCTTGGTTGACAGATAGCGCCCTTGTTATTCCAAC
TTCTTCATCAACTGGACGTCCATTCTTGACACGTATCGAACCATTCTCAGCTCCATTTGCATGGACTGGTGGTAAAGGAA
AAGACCACGTGATCTACAAAGGAATGAAACTCCAAGACAAAGCTGTGACAACTGCTGACTACAACAAAGCCCTTGAAAAA
TGGCAAAAAGAACAAGCAGAGTCAAACAAAAAAGCACAAGAAGATCTTAAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.251

100

0.573
  amiA3 Streptococcus thermophilus LMD-9

56.949

100

0.57
  amiA3 Streptococcus thermophilus LMG 18311

56.647

100

0.567

Multiple sequence alignment