Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   HMPREF0833_RS00795 Genome accession   NC_015678
Coordinates   146535..148502 (+) Length   655 a.a.
NCBI ID   WP_013903283.1    Uniprot ID   A0AAW7P289
Organism   Streptococcus parasanguinis ATCC 15912     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 141535..153502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS00770 (HMPREF0833_10145) glmU 142485..143864 (+) 1380 WP_013903279.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  HMPREF0833_RS00775 (HMPREF0833_10146) - 143874..144419 (+) 546 WP_013903280.1 NUDIX hydrolase -
  HMPREF0833_RS00780 (HMPREF0833_10147) macP 144431..144766 (+) 336 WP_013903281.1 cell wall synthase accessory phosphoprotein MacP -
  HMPREF0833_RS00785 (HMPREF0833_10148) - 144791..145483 (+) 693 WP_037616522.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  HMPREF0833_RS00790 (HMPREF0833_10149) nth 145646..146269 (+) 624 WP_013903282.1 endonuclease III -
  HMPREF0833_RS00795 (HMPREF0833_10150) amiA3 146535..148502 (+) 1968 WP_013903283.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF0833_RS00800 (HMPREF0833_10151) - 148687..149073 (-) 387 WP_013903284.1 VOC family protein -
  HMPREF0833_RS00805 (HMPREF0833_10152) - 149085..149912 (-) 828 WP_003014402.1 exodeoxyribonuclease III -
  HMPREF0833_RS00810 (HMPREF0833_10153) - 150048..150500 (+) 453 WP_003014412.1 DUF3290 family protein -
  HMPREF0833_RS00815 (HMPREF0833_10154) - 150497..151129 (+) 633 WP_003014418.1 DUF421 domain-containing protein -
  HMPREF0833_RS00820 (HMPREF0833_10155) pbp2b 151270..153321 (+) 2052 WP_013903286.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72112.32 Da        Isoelectric Point: 5.3467

>NTDB_id=41364 HMPREF0833_RS00795 WP_013903283.1 146535..148502(+) (amiA3) [Streptococcus parasanguinis ATCC 15912]
MKAKKLLALAGVSVAGAFLLAACGGGSSNQATYSFVYSADPNTLDYIAATRTTTSDVTSNLVDGLLENDQYGNFVPSLAE
DWTVSEDGLTYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVESKSEGLFLIQNSIKGLDAYVKGETKDFNTVGVKA
LDDHTIQYTLVRPESFWNSKTTSGVLFPVNADFLKSQGKDFGSLKPSSILYNGPYYLKSLTSKSEIELVKNKDYYDAKNV
HIDNVKLTFNDGSNPDSIIKNFEKGQYSFASVMPNSSTYKSVKKNFGDNIVYGLQLGTSYYLGFNLDRQKYDHTAKTTDE
QKASTKKAILNKDFRQAVNFAFDRKSYAAQVSGADAAENTLRSTLVPPTYVQINGEDFGKVVEKQLVTYGDQWKGVNLDD
GQTSLYSPEKAKASFAKAKAELQKQGVQFPIHLDYIVSQVDNSMVQQASSFKQSVESALGADNVVVDLQKVSDDDFQNIT
YFSDTAAARDYDISGGGWAPDYQDPSTYLESISPVNGSVSYYFGIDAGTNNPAIAAVGLDQYANMLKDADAELLDQAKRY
EKYAAAQAWLTDSAITLPTVSNGGSPMLQRTVPYSRAASWVGTKGTGTFYKYLEMSKDVVTTKDFNKAKEEWLKKKAESN
KKAQEDLKDHIEKKK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=41364 HMPREF0833_RS00795 WP_013903283.1 146535..148502(+) (amiA3) [Streptococcus parasanguinis ATCC 15912]
ATGAAAGCAAAAAAACTGTTAGCTCTTGCAGGAGTTTCTGTTGCAGGTGCCTTTCTCTTAGCAGCGTGTGGTGGTGGTAG
TAGCAATCAAGCAACCTACTCATTTGTCTATTCAGCGGATCCAAATACCTTGGATTACATCGCTGCAACTCGTACAACAA
CTTCAGATGTCACAAGTAACCTTGTAGATGGTCTTCTTGAAAACGACCAATACGGAAACTTTGTGCCAAGTCTAGCAGAA
GATTGGACTGTCTCTGAAGATGGATTAACCTATACTTACAAACTTCGTAAGGATGCCAAATGGTATACGAGTGAAGGAGA
AGAATATGGTGCTGTAACGGCTCAAGACTTTGTTACAGGGATCAAACACGCGGTTGAGTCTAAATCAGAAGGTCTCTTCT
TGATTCAAAATTCGATCAAAGGTTTGGATGCCTATGTAAAAGGGGAAACCAAAGACTTTAACACAGTTGGAGTCAAAGCC
TTAGACGACCACACCATCCAATATACTTTGGTCCGTCCAGAAAGCTTCTGGAACTCAAAAACAACCTCAGGTGTTCTTTT
CCCAGTCAATGCTGATTTCTTGAAATCTCAAGGAAAAGATTTTGGTTCTTTGAAACCTAGTAGCATCTTATACAATGGTC
CATATTACTTGAAATCATTGACTTCAAAATCTGAGATTGAATTGGTCAAGAACAAAGACTATTACGATGCGAAAAATGTT
CATATCGATAATGTCAAATTGACCTTTAACGATGGATCAAACCCAGATTCTATCATTAAAAACTTTGAAAAAGGTCAATA
TTCCTTTGCATCTGTTATGCCAAACAGCTCGACTTACAAGAGCGTTAAGAAAAACTTTGGCGACAACATTGTCTACGGTT
TACAATTAGGAACATCCTACTATCTTGGATTCAACTTGGACCGTCAAAAGTATGACCACACTGCCAAAACAACGGATGAA
CAAAAAGCTTCTACCAAGAAAGCAATCCTGAACAAGGACTTCCGTCAAGCGGTAAACTTTGCATTTGACCGTAAATCTTA
TGCAGCACAAGTATCCGGGGCTGATGCGGCTGAAAATACCCTTCGTAGTACCTTGGTGCCACCAACCTATGTCCAAATCA
ATGGAGAAGATTTTGGTAAAGTCGTTGAAAAACAATTGGTTACCTATGGAGACCAATGGAAGGGTGTGAATCTGGACGAT
GGTCAAACAAGCCTTTACAGCCCAGAAAAAGCCAAGGCTTCATTTGCGAAAGCTAAAGCTGAATTGCAAAAACAAGGAGT
TCAATTCCCAATTCATTTGGACTATATTGTCAGCCAAGTGGACAACAGCATGGTCCAACAAGCTAGCTCCTTCAAACAAT
CTGTAGAGTCAGCGCTTGGTGCAGACAATGTCGTTGTGGACCTTCAAAAGGTTTCGGATGATGATTTCCAAAATATCACC
TATTTCAGTGATACAGCAGCTGCGAGAGATTACGATATCTCAGGCGGTGGTTGGGCCCCTGACTACCAAGATCCATCCAC
TTATCTCGAAAGTATCAGCCCAGTTAATGGTTCAGTTTCATACTATTTTGGTATAGATGCGGGAACAAACAACCCAGCCA
TTGCAGCAGTTGGTTTGGACCAATACGCCAACATGTTAAAAGATGCGGATGCTGAATTGTTGGATCAAGCAAAACGCTAC
GAAAAATATGCAGCAGCACAAGCTTGGTTGACGGATAGTGCGATTACGCTTCCAACTGTTTCAAATGGTGGTTCTCCAAT
GCTTCAACGGACCGTACCATACAGTCGTGCTGCTTCATGGGTTGGTACAAAAGGAACAGGAACATTCTACAAATACCTTG
AAATGTCCAAAGATGTTGTCACAACAAAAGACTTTAACAAGGCCAAAGAAGAATGGTTGAAGAAAAAAGCAGAATCCAAT
AAAAAAGCTCAAGAAGATCTCAAAGATCATATTGAGAAGAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

53.04

100

0.533
  amiA3 Streptococcus thermophilus LMD-9

53.12

100

0.533
  amiA Streptococcus salivarius strain HSISS4

51.982

100

0.521

Multiple sequence alignment