Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | GT360_RS21920 | Genome accession | NZ_CP047475 |
| Coordinates | 2968347..2968799 (+) | Length | 150 a.a. |
| NCBI ID | WP_239502563.1 | Uniprot ID | - |
| Organism | Vibrio astriarenae strain HN897 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2963347..2973799
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GT360_RS13740 (GT360_13750) | - | 2964092..2966425 (+) | 2334 | WP_164649390.1 | Tex family protein | - |
| GT360_RS13745 (GT360_13755) | - | 2966629..2967090 (-) | 462 | WP_164649391.1 | ATP-dependent Lon protease | - |
| GT360_RS13750 (GT360_13760) | bioH | 2967220..2967984 (-) | 765 | WP_164649392.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| GT360_RS21920 | comF | 2968347..2968799 (+) | 453 | WP_239502563.1 | ComF family protein | Machinery gene |
| GT360_RS13760 (GT360_13770) | nfuA | 2968893..2969480 (+) | 588 | WP_164649394.1 | Fe-S biogenesis protein NfuA | - |
| GT360_RS13765 (GT360_13775) | - | 2969541..2970248 (-) | 708 | WP_164649395.1 | SDR family oxidoreductase | - |
| GT360_RS13770 (GT360_13780) | nudE | 2970440..2970991 (+) | 552 | WP_164649396.1 | ADP compounds hydrolase NudE | - |
| GT360_RS13775 (GT360_13785) | cysQ | 2971028..2971855 (+) | 828 | WP_164649397.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| GT360_RS13780 (GT360_13790) | - | 2971956..2972711 (-) | 756 | WP_164649398.1 | type II secretion system protein N | - |
| GT360_RS13785 (GT360_13795) | - | 2972711..2973208 (-) | 498 | WP_164649399.1 | type II secretion system protein M | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17205.86 Da Isoelectric Point: 10.1153
>NTDB_id=413630 GT360_RS21920 WP_239502563.1 2968347..2968799(+) (comF) [Vibrio astriarenae strain HN897]
MTQLKHQRQFWHARPLALELAAVIEKPAPIITCVPMHWSRRLWRGFNQSEHLAYFLANRLGSEFEPNLLRRNRRTKPQQG
LNARQRQSNLKTAFAINHLSSHKHVAIVDDVVTTGATIEQLCKLLLDVGVETIDIYCVCRTTLNDTNPSV
MTQLKHQRQFWHARPLALELAAVIEKPAPIITCVPMHWSRRLWRGFNQSEHLAYFLANRLGSEFEPNLLRRNRRTKPQQG
LNARQRQSNLKTAFAINHLSSHKHVAIVDDVVTTGATIEQLCKLLLDVGVETIDIYCVCRTTLNDTNPSV
Nucleotide
Download Length: 453 bp
>NTDB_id=413630 GT360_RS21920 WP_239502563.1 2968347..2968799(+) (comF) [Vibrio astriarenae strain HN897]
GTGACTCAACTGAAACATCAAAGACAGTTCTGGCATGCAAGGCCGCTGGCTCTCGAACTTGCGGCAGTGATTGAAAAGCC
CGCTCCTATTATTACCTGTGTGCCAATGCACTGGAGTCGTAGGTTATGGCGCGGTTTTAATCAAAGTGAACACTTGGCGT
ATTTCTTAGCAAATAGACTTGGCAGTGAGTTTGAACCTAACTTACTGCGTCGGAATAGGCGCACCAAACCACAGCAGGGC
TTGAACGCCAGGCAGCGTCAGAGCAACCTAAAGACTGCTTTCGCTATCAATCACCTTTCCTCTCACAAGCATGTCGCGAT
TGTTGATGATGTGGTTACTACAGGGGCGACTATCGAGCAACTGTGCAAATTACTGCTTGATGTTGGCGTGGAAACCATTG
ATATTTATTGTGTCTGTCGCACTACCCTGAACGACACCAACCCTAGTGTTTAA
GTGACTCAACTGAAACATCAAAGACAGTTCTGGCATGCAAGGCCGCTGGCTCTCGAACTTGCGGCAGTGATTGAAAAGCC
CGCTCCTATTATTACCTGTGTGCCAATGCACTGGAGTCGTAGGTTATGGCGCGGTTTTAATCAAAGTGAACACTTGGCGT
ATTTCTTAGCAAATAGACTTGGCAGTGAGTTTGAACCTAACTTACTGCGTCGGAATAGGCGCACCAAACCACAGCAGGGC
TTGAACGCCAGGCAGCGTCAGAGCAACCTAAAGACTGCTTTCGCTATCAATCACCTTTCCTCTCACAAGCATGTCGCGAT
TGTTGATGATGTGGTTACTACAGGGGCGACTATCGAGCAACTGTGCAAATTACTGCTTGATGTTGGCGTGGAAACCATTG
ATATTTATTGTGTCTGTCGCACTACCCTGAACGACACCAACCCTAGTGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
59.712 |
92.667 |
0.553 |
| comF | Vibrio campbellii strain DS40M4 |
49.645 |
94 |
0.467 |
| comF | Haemophilus influenzae 86-028NP |
37.086 |
100 |
0.373 |
| comF | Haemophilus influenzae Rd KW20 |
36.601 |
100 |
0.373 |