Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GT360_RS10215 Genome accession   NZ_CP047475
Coordinates   2187450..2188826 (-) Length   458 a.a.
NCBI ID   WP_164649643.1    Uniprot ID   A0A7Z2T5E5
Organism   Vibrio astriarenae strain HN897     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2182450..2193826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS10180 (GT360_10190) moaE 2183047..2183502 (-) 456 WP_164648760.1 molybdopterin synthase catalytic subunit MoaE -
  GT360_RS10185 (GT360_10195) moaD 2183512..2183757 (-) 246 WP_164648761.1 molybdopterin synthase sulfur carrier subunit -
  GT360_RS10190 (GT360_10200) moaC 2183754..2184233 (-) 480 WP_164648762.1 cyclic pyranopterin monophosphate synthase MoaC -
  GT360_RS10195 (GT360_10205) moaB 2184245..2184757 (-) 513 WP_164648763.1 molybdenum cofactor biosynthesis protein B -
  GT360_RS10200 (GT360_10210) moaA 2184841..2185848 (-) 1008 WP_164648764.1 GTP 3',8-cyclase MoaA -
  GT360_RS10205 (GT360_10215) - 2186160..2187050 (+) 891 WP_164648765.1 YvcK family protein -
  GT360_RS10210 (GT360_10220) - 2187115..2187450 (-) 336 WP_164648766.1 Hpt domain-containing protein -
  GT360_RS10215 (GT360_10225) luxO 2187450..2188826 (-) 1377 WP_164649643.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GT360_RS10220 (GT360_10230) uvrB 2189183..2191213 (-) 2031 WP_164648767.1 excinuclease ABC subunit UvrB -
  GT360_RS10230 (GT360_10240) rsxA 2192000..2192581 (+) 582 WP_164648768.1 electron transport complex subunit RsxA -
  GT360_RS10235 (GT360_10245) rsxB 2192581..2193168 (+) 588 WP_164648769.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50999.28 Da        Isoelectric Point: 4.9885

>NTDB_id=413614 GT360_RS10215 WP_164649643.1 2187450..2188826(-) (luxO) [Vibrio astriarenae strain HN897]
MVEDTASVATLYRTYLTPLGIDINIVVNGHDAIESLNHRIPDLILLDLRLPDMTGMDVLEIVKKTHPDVPVIFMTAHGSI
ETAVEAMRLGAQDFLIKPCEADQLRITVNTAMRKAEKLKTDVGNPKNHRYQGFIGSSQNMQSVYRVIDSAASSKASIFIT
GESGTGKEVCAEAIHAASNRRSNPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAEMADGGTLFLDEICEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWTEVQEGRFREDLYYRLYVIPLHLPPLRERGEDIIEIAYSLLG
FMSNEEGKAFNHLSPPVVERFISYEWPGNVRQLQNVLRNVVVLNTGKEITLEMLPPPINSIDIQSASVLRGEAEAPQSDP
VIFTEQDILPLWESEKATIERAIEACEGNIPKAARLLEVSPSTLYRKLQSWEQRKEVN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=413614 GT360_RS10215 WP_164649643.1 2187450..2188826(-) (luxO) [Vibrio astriarenae strain HN897]
ATGGTAGAGGACACTGCGTCTGTTGCGACTCTGTATCGCACCTATCTCACTCCTCTTGGCATTGATATCAATATCGTTGT
CAACGGACATGATGCGATAGAAAGCCTCAACCATCGAATTCCTGATCTTATCCTGCTCGATCTTCGCCTACCCGATATGA
CGGGTATGGATGTTCTAGAGATAGTAAAGAAAACACATCCCGATGTTCCCGTCATCTTCATGACCGCCCACGGCTCAATT
GAAACCGCGGTTGAGGCGATGCGCTTGGGTGCACAGGACTTTTTGATTAAGCCCTGTGAAGCTGACCAACTCCGTATAAC
TGTTAATACCGCGATGCGCAAGGCAGAAAAGCTCAAAACGGATGTGGGCAACCCTAAGAACCATCGATACCAGGGGTTTA
TCGGTAGTAGCCAGAATATGCAGTCGGTGTATCGAGTTATTGACTCCGCTGCGAGCAGTAAAGCAAGCATCTTCATTACT
GGTGAGAGTGGTACGGGTAAAGAGGTGTGTGCAGAAGCTATCCACGCTGCAAGTAATCGCCGTTCTAACCCGTTCATCGC
GATCAACTGTGCAGCAATTCCTAAAGACTTGATTGAAAGTGAGCTGTTTGGTCATGTCAAAGGCGCCTTTACCGGGGCTT
CTACTGATAGACAAGGTGCAGCAGAGATGGCGGATGGCGGGACGCTGTTCTTGGATGAGATCTGTGAAATGGATTTGGAC
CTGCAGACTAAACTATTGCGGTTTATCCAAACGGGCACTTTTCAGAAGGTGGGCTCTTCAAAGATGAAGAGTGTTGATGT
GCGTTTTGTATGTGCGACTAACCGTGACCCGTGGACAGAAGTTCAAGAAGGGCGTTTCAGAGAGGACTTGTACTATCGTC
TGTATGTGATTCCATTGCACCTACCGCCATTGCGTGAGCGAGGTGAGGATATCATTGAGATTGCCTACTCACTGCTTGGC
TTTATGTCAAACGAGGAGGGGAAAGCGTTCAACCATCTGTCACCACCAGTAGTGGAACGTTTTATTAGCTATGAGTGGCC
AGGTAATGTTCGTCAGTTGCAAAATGTTTTACGTAATGTCGTGGTGCTCAACACCGGTAAAGAAATTACGCTGGAGATGT
TACCTCCGCCGATAAACAGTATTGATATTCAATCTGCTAGCGTATTGAGAGGGGAGGCAGAGGCACCTCAATCGGATCCT
GTTATCTTCACGGAGCAAGATATTTTGCCTTTGTGGGAAAGTGAAAAGGCGACCATTGAACGAGCGATTGAGGCATGTGA
GGGAAATATTCCCAAGGCAGCACGCCTTTTAGAGGTGAGCCCATCAACCTTGTACCGTAAGTTGCAATCCTGGGAACAGC
GTAAAGAGGTCAACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(411-449)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2T5E5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

79.379

98.472

0.782
  pilR Pseudomonas aeruginosa PAK

37.939

99.563

0.378

Multiple sequence alignment