Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GTO87_RS00190 Genome accession   NZ_CP047418
Coordinates   35262..35849 (+) Length   195 a.a.
NCBI ID   WP_180849013.1    Uniprot ID   A0A7H9EIB3
Organism   Ligilactobacillus saerimneri strain 1A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 30262..40849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO87_RS00160 (GTO87_00160) - 30530..31402 (-) 873 WP_180849007.1 LysR family transcriptional regulator -
  GTO87_RS00165 (GTO87_00165) - 31522..32382 (+) 861 WP_180849668.1 aldo/keto reductase -
  GTO87_RS00170 (GTO87_00170) - 32411..33445 (+) 1035 WP_180849009.1 alcohol dehydrogenase catalytic domain-containing protein -
  GTO87_RS00175 (GTO87_00175) - 33691..34401 (+) 711 WP_180849011.1 AzlC family ABC transporter permease -
  GTO87_RS00180 (GTO87_00180) - 34407..34733 (+) 327 WP_331250865.1 branched-chain amino acid transporter permease -
  GTO87_RS00185 (GTO87_00185) rpsF 34939..35226 (+) 288 WP_009552686.1 30S ribosomal protein S6 -
  GTO87_RS00190 (GTO87_00190) ssb 35262..35849 (+) 588 WP_180849013.1 single-stranded DNA-binding protein Machinery gene
  GTO87_RS00195 (GTO87_00195) rpsR 35867..36103 (+) 237 WP_009552689.1 30S ribosomal protein S18 -
  GTO87_RS00200 (GTO87_00200) - 36294..36485 (+) 192 WP_180849015.1 helix-turn-helix transcriptional regulator -
  GTO87_RS00205 (GTO87_00205) - 36491..37030 (+) 540 WP_180849017.1 DUF3278 domain-containing protein -
  GTO87_RS00210 (GTO87_00210) - 37106..37972 (-) 867 WP_180849019.1 aldo/keto reductase -
  GTO87_RS00215 (GTO87_00215) - 38154..38588 (+) 435 WP_180849021.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21247.97 Da        Isoelectric Point: 4.7664

>NTDB_id=413420 GTO87_RS00190 WP_180849013.1 35262..35849(+) (ssb) [Ligilactobacillus saerimneri strain 1A]
MINRVVITGRLTRDAELRYTQSGVAVASFTVAVDRQFRTQAGEREADFINCVIWRKSAENFVNFTHKGSMVGIDGRLQTR
NYENQQGQRVYVTEVVVDSFALMESRSQSEQYRQTHGGNDMGQGGAPNNGFTSGNNGYAGGNNAPAGGYSNPSQGYSNNA
APMSGNTGNQNQDLNQDPFSDDQNGKVISDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=413420 GTO87_RS00190 WP_180849013.1 35262..35849(+) (ssb) [Ligilactobacillus saerimneri strain 1A]
TTGATCAATAGAGTCGTTATTACAGGTCGTTTGACCCGGGACGCAGAATTGCGTTATACCCAAAGTGGAGTAGCGGTGGC
AAGTTTTACGGTGGCAGTTGATCGGCAATTCCGGACCCAAGCAGGGGAACGGGAAGCTGATTTCATTAATTGCGTAATCT
GGCGGAAGTCAGCCGAAAACTTTGTCAACTTTACCCATAAAGGTTCAATGGTGGGAATCGATGGGCGGTTGCAAACGAGA
AACTACGAAAACCAACAAGGTCAAAGGGTTTACGTGACTGAAGTGGTGGTAGATTCCTTTGCCCTGATGGAAAGTCGTTC
CCAATCGGAACAGTACCGACAAACACATGGTGGTAACGACATGGGTCAAGGTGGTGCTCCAAATAACGGTTTCACATCCG
GAAATAACGGATATGCTGGGGGAAATAATGCTCCAGCCGGTGGTTATAGCAACCCGAGCCAGGGTTACTCCAACAATGCC
GCTCCGATGTCGGGGAACACTGGTAATCAAAACCAAGATCTTAACCAAGATCCATTTAGTGATGACCAGAACGGCAAAGT
TATTTCTGATGATGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9EIB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.385

100

0.554
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.251

100

0.513

Multiple sequence alignment