Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H5409_RS09785 Genome accession   NZ_CP060086
Coordinates   2100323..2100652 (+) Length   109 a.a.
NCBI ID   WP_034084275.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JNQH-PA57     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095323..2105652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5409_RS09770 (H5409_09770) - 2095721..2096674 (+) 954 WP_003138480.1 SDR family oxidoreductase -
  H5409_RS09775 (H5409_09775) - 2096674..2097690 (+) 1017 WP_003138482.1 MraY family glycosyltransferase -
  H5409_RS09780 (H5409_09780) - 2098135..2100132 (+) 1998 WP_003138484.1 polysaccharide biosynthesis protein -
  H5409_RS09785 (H5409_09785) comEA 2100323..2100652 (+) 330 WP_034084275.1 ComEA family DNA-binding protein Machinery gene
  H5409_RS09795 (H5409_09795) - 2100869..2102065 (-) 1197 WP_003110849.1 amino acid aminotransferase -
  H5409_RS09800 (H5409_09800) uvrB 2102253..2104265 (+) 2013 WP_003110848.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11385.34 Da        Isoelectric Point: 8.0459

>NTDB_id=413294 H5409_RS09785 WP_034084275.1 2100323..2100652(+) (comEA) [Pseudomonas aeruginosa strain JNQH-PA57]
MHLIKSALLLMLFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=413294 H5409_RS09785 WP_034084275.1 2100323..2100652(+) (comEA) [Pseudomonas aeruginosa strain JNQH-PA57]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATGCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

37.719

100

0.394
  comEA Vibrio cholerae strain A1552

37.719

100

0.394
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385