Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GTN31_RS06875 | Genome accession | NZ_CP047361 |
| Coordinates | 1335405..1336376 (-) | Length | 323 a.a. |
| NCBI ID | WP_164942281.1 | Uniprot ID | - |
| Organism | Macrococcoides canis strain SD607 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1330405..1341376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTN31_RS06840 (GTN31_06830) | gcvT | 1331100..1332185 (-) | 1086 | WP_164943023.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GTN31_RS06845 (GTN31_06835) | - | 1332323..1332829 (-) | 507 | WP_164942276.1 | shikimate kinase | - |
| GTN31_RS06850 (GTN31_06840) | - | 1332990..1333442 (-) | 453 | WP_164942277.1 | competence type IV pilus minor pilin ComGF | - |
| GTN31_RS06855 (GTN31_06845) | - | 1333387..1333629 (-) | 243 | WP_164942278.1 | hypothetical protein | - |
| GTN31_RS06860 (GTN31_06850) | comGD | 1333616..1334041 (-) | 426 | WP_280514960.1 | competence type IV pilus minor pilin ComGD | - |
| GTN31_RS06865 (GTN31_06855) | comGC | 1334034..1334366 (-) | 333 | WP_174804787.1 | competence type IV pilus major pilin ComGC | - |
| GTN31_RS06870 (GTN31_06860) | comGB | 1334381..1335430 (-) | 1050 | WP_164942280.1 | competence type IV pilus assembly protein ComGB | - |
| GTN31_RS06875 (GTN31_06865) | comGA | 1335405..1336376 (-) | 972 | WP_164942281.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GTN31_RS06880 (GTN31_06870) | - | 1336589..1336837 (+) | 249 | WP_086042733.1 | DUF2626 domain-containing protein | - |
| GTN31_RS06885 (GTN31_06875) | - | 1336865..1337485 (-) | 621 | WP_164942282.1 | MBL fold metallo-hydrolase | - |
| GTN31_RS06890 (GTN31_06880) | - | 1337575..1337814 (+) | 240 | WP_174804788.1 | DUF2759 domain-containing protein | - |
| GTN31_RS06895 (GTN31_06885) | - | 1337841..1338152 (-) | 312 | WP_086042736.1 | MTH1187 family thiamine-binding protein | - |
| GTN31_RS06900 (GTN31_06890) | - | 1338152..1339120 (-) | 969 | WP_164942283.1 | ROK family glucokinase | - |
| GTN31_RS06905 (GTN31_06895) | - | 1339117..1339308 (-) | 192 | WP_086042738.1 | YqgQ family protein | - |
| GTN31_RS06910 (GTN31_06900) | - | 1339313..1340761 (-) | 1449 | WP_164942284.1 | rhomboid family protein | - |
| GTN31_RS06915 (GTN31_06905) | - | 1340737..1341291 (-) | 555 | WP_164942285.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37275.84 Da Isoelectric Point: 6.5751
>NTDB_id=412959 GTN31_RS06875 WP_164942281.1 1335405..1336376(-) (comGA) [Macrococcoides canis strain SD607]
MEQLFNEIIEEAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINAVDLYQSINLIINQRLVRKKDGMGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
MEQLFNEIIEEAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINAVDLYQSINLIINQRLVRKKDGMGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
Nucleotide
Download Length: 972 bp
>NTDB_id=412959 GTN31_RS06875 WP_164942281.1 1335405..1336376(-) (comGA) [Macrococcoides canis strain SD607]
ATGGAACAGTTATTCAATGAAATAATAGAGGAAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGTATATCTATCAAATTTAGGATACACGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACGGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGCGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAAGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGACCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTAG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTCGTTTTAACAACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATGCTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGATGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
ATGGAACAGTTATTCAATGAAATAATAGAGGAAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGTATATCTATCAAATTTAGGATACACGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACGGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGCGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAAGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGACCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTAG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTCGTTTTAACAACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATGCTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGATGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
49.39 |
100 |
0.502 |
| comGA | Staphylococcus aureus N315 |
49.39 |
100 |
0.502 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
37.73 |
100 |
0.381 |
| pilB | Glaesserella parasuis strain SC1401 |
34.302 |
100 |
0.365 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
35.03 |
100 |
0.362 |