Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GSY53_RS20250 Genome accession   NZ_CP047325
Coordinates   3959066..3959401 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain GOT9     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3954066..3964401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS20230 (GSY53_20230) gcvT 3954658..3955746 (-) 1089 WP_003230205.1 glycine cleavage system aminomethyltransferase GcvT -
  GSY53_RS20235 (GSY53_20235) hepAA 3956188..3957861 (+) 1674 WP_003230203.1 SNF2-related protein -
  GSY53_RS20240 (GSY53_20240) yqhG 3957882..3958676 (+) 795 WP_003230200.1 YqhG family protein -
  GSY53_RS20245 (GSY53_20245) sinI 3958859..3959032 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  GSY53_RS20250 (GSY53_20250) sinR 3959066..3959401 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GSY53_RS20255 (GSY53_20255) tasA 3959494..3960279 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  GSY53_RS20260 (GSY53_20260) sipW 3960343..3960915 (-) 573 WP_003230181.1 signal peptidase I SipW -
  GSY53_RS20265 (GSY53_20265) tapA 3960899..3961660 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  GSY53_RS20270 (GSY53_20270) yqzG 3961932..3962258 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GSY53_RS20275 (GSY53_20275) spoIITA 3962300..3962479 (-) 180 WP_003230176.1 YqzE family protein -
  GSY53_RS20280 (GSY53_20280) comGG 3962550..3962924 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  GSY53_RS20285 (GSY53_20285) comGF 3962925..3963308 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  GSY53_RS20290 (GSY53_20290) comGE 3963334..3963681 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  GSY53_RS20295 (GSY53_20295) comGD 3963665..3964096 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  GSY53_RS20300 (GSY53_20300) comGC 3964086..3964382 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=412745 GSY53_RS20250 WP_003226345.1 3959066..3959401(+) (sinR) [Bacillus subtilis strain GOT9]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=412745 GSY53_RS20250 WP_003226345.1 3959066..3959401(+) (sinR) [Bacillus subtilis strain GOT9]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment