Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   H6S61_RS04145 Genome accession   NZ_CP060047
Coordinates   761058..763307 (-) Length   749 a.a.
NCBI ID   WP_275289530.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756058..768307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS04120 (H6S61_04120) - 756393..757181 (-) 789 WP_017422018.1 GGDEF domain-containing protein -
  H6S61_RS04125 (H6S61_04125) kdsB 757352..758107 (-) 756 WP_045595160.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H6S61_RS04130 (H6S61_04130) - 758107..758286 (-) 180 WP_011079973.1 Trm112 family protein -
  H6S61_RS04135 (H6S61_04135) lpxK 758267..759274 (-) 1008 WP_185891633.1 tetraacyldisaccharide 4'-kinase -
  H6S61_RS04140 (H6S61_04140) msbA 759274..761025 (-) 1752 WP_130196448.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  H6S61_RS04145 (H6S61_04145) comEC 761058..763307 (-) 2250 WP_275289530.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H6S61_RS04150 (H6S61_04150) - 763316..763825 (+) 510 WP_026050611.1 DUF2062 domain-containing protein -
  H6S61_RS04155 (H6S61_04155) lolE 764022..765266 (-) 1245 WP_038939815.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  H6S61_RS04160 (H6S61_04160) lolD 765277..765960 (-) 684 WP_038969895.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  H6S61_RS04165 (H6S61_04165) lolC 765953..767158 (-) 1206 WP_080540969.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  H6S61_RS04170 (H6S61_04170) - 767424..767993 (+) 570 WP_026050610.1 hypothetical protein -

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 84335.61 Da        Isoelectric Point: 8.7082

>NTDB_id=412694 H6S61_RS04145 WP_275289530.1 761058..763307(-) (comEC) [Vibrio vulnificus strain 2497-87]
MTLLGNNWLLASFSATLISASYWPLMPSWPWFMLIVVAIFIIIVRKTCRYLLGMTIALLIAISAGNLMQWQVKTLFQAGE
NITINGAVDSPFKQISHGYEGVVSITAINNSHLMWPLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAV
SQGIVGRATIDDSRSWRLVSVKGGRQALIEKAQQILVNSNHTGYLLGLSFGIRDDITDEQWQQLKQSGLIHLLSISGLHI
GMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSLSWSYAWLAGFTLPTQRAIVFVTLVALFLFTSRQVGRWTVLLLALAFCL
AMSPFSALSASLWLSFLAVSCVFLVVDLHESSSTRIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFS
LVVVPVIFVALVLTALDMMPVASMLWQLADFSLWPLTFAMPYAHLGWWGLSSFQVLLVALCAFAVMLRHVIRWQFSAVLI
ILLSITSLLNQPLSRTRIDVLDVGHGLAVLIEKDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDH
AGGLPYLQQNMRPQWVRSSHYLSDFPCIKGQDFEWQGLKMTVLWPPKQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDAL
AEWILIREPEQLNSDVVLVPHHGSQTSSIEPFVKALQADAAIASLAKGNQWGMPQPQVVETYRRHRTQWFDTGELGQITL
YVEQRRWQIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=412694 H6S61_RS04145 WP_275289530.1 761058..763307(-) (comEC) [Vibrio vulnificus strain 2497-87]
ATGACTCTCTTAGGTAACAATTGGTTATTGGCTTCTTTTTCAGCAACCCTTATTTCGGCAAGCTACTGGCCGCTTATGCC
TTCCTGGCCTTGGTTCATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCTGGGGA
TGACCATCGCACTTTTGATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAG
AATATTACCATAAATGGCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGTATCACAGC
AATAAATAATAGTCATTTAATGTGGCCCTTGCGACCCAAAGTGCGTTTGATCTCACCCATTCCTCTTGGTCAGGGGGATC
AAATCGTAGCGCACGTTACGCTAAAACGTGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCTGAACGTTTTGCTGTC
AGCCAAGGCATCGTTGGACGTGCAACTATTGATGATTCTCGCTCTTGGCGTTTAGTCTCCGTGAAGGGAGGGAGACAAGC
GCTGATCGAAAAAGCTCAGCAGATACTGGTTAATAGCAATCATACCGGTTATTTGCTTGGCTTAAGCTTTGGTATTCGCG
ACGACATTACCGACGAACAATGGCAGCAACTCAAGCAAAGCGGTTTGATACATCTGCTTTCCATCTCAGGGTTGCACATT
GGTATGGCTTTTGGCATCGGTTACTGGCTAGGGCATTGGTTGCGTTTTGGACGGCTTACTCTCGTTTGGCTGCCGTTGGC
TATTGGATTAAGTCTCAGTTGGAGCTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCGATCGTCTTTGTTA
CGTTAGTGGCGTTGTTCTTGTTTACGTCGAGGCAAGTGGGGCGCTGGACAGTCTTGCTGTTGGCACTGGCCTTTTGCCTA
GCGATGTCGCCATTTTCTGCTCTTTCTGCCAGTCTCTGGCTCTCTTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGA
TCTCCATGAATCGTCTTCCACTAGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTACTGCTTTATCTCG
CACCTGTGACTGCTTACTTCTTTTCCGGTCTGAGTTTAGCCGCCTGGCTGTACAACTTTCTGTTTATCCCTTGGTTTAGC
TTGGTGGTGGTGCCTGTCATATTTGTTGCACTCGTGCTGACGGCACTGGATATGATGCCTGTGGCAAGTATGCTATGGCA
GTTGGCGGATTTTAGTTTATGGCCATTAACTTTCGCGATGCCTTACGCCCATTTAGGCTGGTGGGGGCTGTCTTCTTTTC
AGGTGTTGTTGGTCGCGTTGTGCGCGTTCGCTGTGATGCTTCGACATGTTATTCGCTGGCAATTCTCTGCCGTTCTGATC
ATTTTGCTCAGCATTACTTCACTCTTGAACCAGCCTCTTTCTCGCACTCGAATTGACGTTTTGGATGTTGGCCATGGGCT
CGCCGTATTGATTGAGAAAGACGGTAAAACACTGCTTTATGACACCGGAAAGTCTTGGCATGGTGGTAGTATTGCGCAGC
AAGTGATCGAGCCTATTTTATTGAGTCGGGGTAGTAGAAGCCTGGATGGGGTGATCATCAGTCATCAAGATGACGATCAT
GCAGGTGGCTTGCCCTATTTGCAGCAAAACATGCGCCCACAGTGGGTAAGGAGTAGTCATTACTTGAGTGACTTTCCTTG
TATTAAAGGTCAGGACTTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCACCAAAGCAAGTGACTCGTGCCTACA
ACCCACACTCCTGTGTGATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGCGATATTGACGCTTTG
GCTGAGTGGATCCTGATTCGTGAACCTGAACAGTTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTC
GTCGATTGAGCCTTTTGTGAAAGCCCTCCAAGCAGACGCGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGC
CACAACCGCAAGTGGTCGAGACTTATCGACGACATCGTACGCAGTGGTTTGATACCGGTGAGCTGGGCCAGATAACTTTG
TATGTGGAACAGAGACGCTGGCAAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCA
AGTAGAATAG

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(28-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-684)

Competence protein (Competence)

(208-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

45.503

100

0.459
  comEC Vibrio campbellii strain DS40M4

45.132

100

0.458
  comEC Vibrio cholerae strain A1552

43.484

100

0.437