Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GEOTH_RS06185 Genome accession   NC_015660
Coordinates   1191834..1192130 (+) Length   98 a.a.
NCBI ID   WP_003249184.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius C56-YS93     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1186834..1197130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOTH_RS06160 (Geoth_1238) - 1187205..1188338 (+) 1134 WP_013876626.1 class I SAM-dependent methyltransferase -
  GEOTH_RS06165 (Geoth_1239) - 1188389..1188631 (-) 243 WP_003249178.1 DUF2626 family protein -
  GEOTH_RS06170 (Geoth_1240) - 1188832..1189530 (-) 699 WP_003249180.1 helix-turn-helix transcriptional regulator -
  GEOTH_RS06175 (Geoth_1241) comGA 1189733..1190797 (+) 1065 WP_013400390.1 competence type IV pilus ATPase ComGA Machinery gene
  GEOTH_RS06180 (Geoth_1242) comGB 1190790..1191821 (+) 1032 WP_003249183.1 competence type IV pilus assembly protein ComGB -
  GEOTH_RS06185 (Geoth_1243) comGC 1191834..1192130 (+) 297 WP_003249184.1 competence type IV pilus major pilin ComGC Machinery gene
  GEOTH_RS06190 (Geoth_1244) comGD 1192114..1192557 (+) 444 WP_003249186.1 competence type IV pilus minor pilin ComGD -
  GEOTH_RS06195 (Geoth_1245) comGE 1192541..1192864 (+) 324 WP_003249188.1 competence type IV pilus minor pilin ComGE -
  GEOTH_RS06200 (Geoth_1246) comGF 1192861..1193286 (+) 426 WP_013876627.1 competence type IV pilus minor pilin ComGF -
  GEOTH_RS06205 (Geoth_1247) comGG 1193303..1193692 (+) 390 WP_013876628.1 competence type IV pilus minor pilin ComGG -
  GEOTH_RS06210 (Geoth_1248) - 1193682..1193939 (+) 258 WP_013876629.1 hypothetical protein -
  GEOTH_RS06215 (Geoth_1249) - 1193960..1194139 (+) 180 WP_003249195.1 YqzE family protein -
  GEOTH_RS06220 (Geoth_1250) - 1194197..1194988 (-) 792 WP_013876630.1 YqhG family protein -
  GEOTH_RS06225 (Geoth_1251) - 1194975..1196642 (-) 1668 WP_013876631.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10930.83 Da        Isoelectric Point: 7.1327

>NTDB_id=41265 GEOTH_RS06185 WP_003249184.1 1191834..1192130(+) (comGC) [Parageobacillus thermoglucosidasius C56-YS93]
MNEKAFTLIEMLIVLMVISVLLLIVIPNITKHNGMINNKGCEAFVNTVQAQVKAYEMEHNKIPTIQELINEKYIKSDQCP
NGRKIQISSDGKVSESGA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=41265 GEOTH_RS06185 WP_003249184.1 1191834..1192130(+) (comGC) [Parageobacillus thermoglucosidasius C56-YS93]
ATGAATGAAAAAGCGTTCACATTGATTGAAATGTTGATCGTGCTAATGGTTATTTCTGTTTTATTGCTTATCGTCATCCC
GAATATCACGAAACATAATGGAATGATTAATAATAAAGGCTGCGAAGCGTTCGTAAACACCGTGCAAGCTCAAGTAAAGG
CATATGAAATGGAACATAACAAAATTCCGACGATACAGGAGCTCATCAACGAAAAGTATATTAAGTCCGATCAGTGCCCA
AACGGACGTAAAATTCAAATCAGCAGCGACGGGAAAGTAAGTGAAAGCGGTGCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.945

92.857

0.51
  comGC Staphylococcus aureus MW2

45.745

95.918

0.439
  comGC Staphylococcus aureus N315

45.745

95.918

0.439

Multiple sequence alignment