Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GEOTH_RS06175 | Genome accession | NC_015660 |
| Coordinates | 1189733..1190797 (+) | Length | 354 a.a. |
| NCBI ID | WP_013400390.1 | Uniprot ID | - |
| Organism | Parageobacillus thermoglucosidasius C56-YS93 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1184733..1195797
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEOTH_RS06145 (Geoth_1235) | - | 1185384..1185695 (+) | 312 | WP_003249171.1 | MTH1187 family thiamine-binding protein | - |
| GEOTH_RS20280 (Geoth_1236) | - | 1185728..1185904 (-) | 177 | WP_013400388.1 | DUF2759 domain-containing protein | - |
| GEOTH_RS06155 (Geoth_1237) | - | 1186240..1186872 (+) | 633 | WP_003249173.1 | MBL fold metallo-hydrolase | - |
| GEOTH_RS06160 (Geoth_1238) | - | 1187205..1188338 (+) | 1134 | WP_013876626.1 | class I SAM-dependent methyltransferase | - |
| GEOTH_RS06165 (Geoth_1239) | - | 1188389..1188631 (-) | 243 | WP_003249178.1 | DUF2626 family protein | - |
| GEOTH_RS06170 (Geoth_1240) | - | 1188832..1189530 (-) | 699 | WP_003249180.1 | helix-turn-helix transcriptional regulator | - |
| GEOTH_RS06175 (Geoth_1241) | comGA | 1189733..1190797 (+) | 1065 | WP_013400390.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GEOTH_RS06180 (Geoth_1242) | comGB | 1190790..1191821 (+) | 1032 | WP_003249183.1 | competence type IV pilus assembly protein ComGB | - |
| GEOTH_RS06185 (Geoth_1243) | comGC | 1191834..1192130 (+) | 297 | WP_003249184.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GEOTH_RS06190 (Geoth_1244) | comGD | 1192114..1192557 (+) | 444 | WP_003249186.1 | competence type IV pilus minor pilin ComGD | - |
| GEOTH_RS06195 (Geoth_1245) | comGE | 1192541..1192864 (+) | 324 | WP_003249188.1 | competence type IV pilus minor pilin ComGE | - |
| GEOTH_RS06200 (Geoth_1246) | comGF | 1192861..1193286 (+) | 426 | WP_013876627.1 | competence type IV pilus minor pilin ComGF | - |
| GEOTH_RS06205 (Geoth_1247) | comGG | 1193303..1193692 (+) | 390 | WP_013876628.1 | competence type IV pilus minor pilin ComGG | - |
| GEOTH_RS06210 (Geoth_1248) | - | 1193682..1193939 (+) | 258 | WP_013876629.1 | hypothetical protein | - |
| GEOTH_RS06215 (Geoth_1249) | - | 1193960..1194139 (+) | 180 | WP_003249195.1 | YqzE family protein | - |
| GEOTH_RS06220 (Geoth_1250) | - | 1194197..1194988 (-) | 792 | WP_013876630.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39886.36 Da Isoelectric Point: 9.1564
>NTDB_id=41264 GEOTH_RS06175 WP_013400390.1 1189733..1190797(+) (comGA) [Parageobacillus thermoglucosidasius C56-YS93]
MNEIEYLADRLIKEASVLRVSDIHIVPRKDDAAVRFRLDGLLMEKEVLTKEICDRLITHFKFLAGMDIGERRRPQSGAME
TKQQGEIIHLRLSTLPTSYDESLVIRLLPQNLFLPLSQLSLFANAAKTLLSLFQQPQGLIIFTGPAGSGKTTTLYTLLRV
CQSKWNRNVITLEDPVEKRIDNILQVQINERAGITYANGLKAALRHDPNIIMIGEIRDAETAKIAVRSSMTGHLIASTMH
TKNAVGAIYRLREFGIPLHDIEQTLLAVTAQRLVDLVCPFCGEHCSPFCRKHRHIRRAAVHELLYGDALSDAIQSVQNGR
KTYRYYTLQNVIRKGVALGFLPPRLLCAKEGENE
MNEIEYLADRLIKEASVLRVSDIHIVPRKDDAAVRFRLDGLLMEKEVLTKEICDRLITHFKFLAGMDIGERRRPQSGAME
TKQQGEIIHLRLSTLPTSYDESLVIRLLPQNLFLPLSQLSLFANAAKTLLSLFQQPQGLIIFTGPAGSGKTTTLYTLLRV
CQSKWNRNVITLEDPVEKRIDNILQVQINERAGITYANGLKAALRHDPNIIMIGEIRDAETAKIAVRSSMTGHLIASTMH
TKNAVGAIYRLREFGIPLHDIEQTLLAVTAQRLVDLVCPFCGEHCSPFCRKHRHIRRAAVHELLYGDALSDAIQSVQNGR
KTYRYYTLQNVIRKGVALGFLPPRLLCAKEGENE
Nucleotide
Download Length: 1065 bp
>NTDB_id=41264 GEOTH_RS06175 WP_013400390.1 1189733..1190797(+) (comGA) [Parageobacillus thermoglucosidasius C56-YS93]
ATGAATGAAATCGAATATCTTGCCGATCGTCTCATCAAAGAAGCAAGTGTGCTTCGTGTGTCTGACATTCACATCGTTCC
GCGCAAAGACGATGCAGCAGTGCGTTTCCGGCTTGATGGATTGCTTATGGAAAAAGAAGTGCTCACAAAAGAAATATGCG
ATCGCCTGATAACCCATTTTAAGTTTTTAGCCGGAATGGACATTGGCGAACGCCGCCGGCCGCAAAGCGGGGCGATGGAA
ACAAAGCAGCAAGGGGAAATTATTCACTTGCGCCTTTCCACACTGCCGACATCTTACGATGAAAGCCTCGTCATTCGGCT
TCTTCCCCAAAATTTGTTTCTTCCTCTTTCACAGCTTTCTTTATTTGCCAATGCCGCAAAAACATTGCTTTCCCTTTTTC
AGCAACCTCAAGGGTTAATTATTTTCACAGGACCAGCCGGGTCAGGAAAGACGACGACATTGTACACGTTGCTGCGCGTC
TGCCAGTCCAAATGGAACCGCAATGTCATCACATTAGAGGATCCTGTTGAAAAGCGAATCGACAATATATTGCAAGTGCA
AATCAATGAGAGAGCAGGCATCACATATGCAAACGGCTTAAAAGCAGCTTTGCGGCACGATCCAAACATTATTATGATCG
GCGAAATCCGGGATGCCGAAACGGCAAAAATCGCGGTACGTTCGTCGATGACAGGACATTTGATTGCGTCGACAATGCAT
ACGAAAAACGCGGTGGGAGCGATTTACCGTTTGCGTGAATTTGGGATTCCGCTTCATGATATTGAGCAAACGCTGCTTGC
CGTGACAGCGCAGCGGCTTGTCGACTTAGTATGCCCGTTTTGCGGCGAACATTGCTCGCCATTTTGCCGCAAACATCGCC
ACATTCGCCGCGCCGCCGTTCATGAGCTGTTGTATGGAGATGCGCTGTCTGACGCAATTCAATCCGTGCAAAACGGAAGA
AAAACGTATCGTTACTATACGCTGCAAAACGTGATTCGAAAAGGGGTTGCTCTCGGATTTTTGCCGCCGCGCCTTCTTTG
CGCCAAGGAGGGAGAAAATGAATAA
ATGAATGAAATCGAATATCTTGCCGATCGTCTCATCAAAGAAGCAAGTGTGCTTCGTGTGTCTGACATTCACATCGTTCC
GCGCAAAGACGATGCAGCAGTGCGTTTCCGGCTTGATGGATTGCTTATGGAAAAAGAAGTGCTCACAAAAGAAATATGCG
ATCGCCTGATAACCCATTTTAAGTTTTTAGCCGGAATGGACATTGGCGAACGCCGCCGGCCGCAAAGCGGGGCGATGGAA
ACAAAGCAGCAAGGGGAAATTATTCACTTGCGCCTTTCCACACTGCCGACATCTTACGATGAAAGCCTCGTCATTCGGCT
TCTTCCCCAAAATTTGTTTCTTCCTCTTTCACAGCTTTCTTTATTTGCCAATGCCGCAAAAACATTGCTTTCCCTTTTTC
AGCAACCTCAAGGGTTAATTATTTTCACAGGACCAGCCGGGTCAGGAAAGACGACGACATTGTACACGTTGCTGCGCGTC
TGCCAGTCCAAATGGAACCGCAATGTCATCACATTAGAGGATCCTGTTGAAAAGCGAATCGACAATATATTGCAAGTGCA
AATCAATGAGAGAGCAGGCATCACATATGCAAACGGCTTAAAAGCAGCTTTGCGGCACGATCCAAACATTATTATGATCG
GCGAAATCCGGGATGCCGAAACGGCAAAAATCGCGGTACGTTCGTCGATGACAGGACATTTGATTGCGTCGACAATGCAT
ACGAAAAACGCGGTGGGAGCGATTTACCGTTTGCGTGAATTTGGGATTCCGCTTCATGATATTGAGCAAACGCTGCTTGC
CGTGACAGCGCAGCGGCTTGTCGACTTAGTATGCCCGTTTTGCGGCGAACATTGCTCGCCATTTTGCCGCAAACATCGCC
ACATTCGCCGCGCCGCCGTTCATGAGCTGTTGTATGGAGATGCGCTGTCTGACGCAATTCAATCCGTGCAAAACGGAAGA
AAAACGTATCGTTACTATACGCTGCAAAACGTGATTCGAAAAGGGGTTGCTCTCGGATTTTTGCCGCCGCGCCTTCTTTG
CGCCAAGGAGGGAGAAAATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
55.848 |
96.61 |
0.54 |
| pilB | Haemophilus influenzae 86-028NP |
41.25 |
90.395 |
0.373 |
| pilB | Glaesserella parasuis strain SC1401 |
42.105 |
85.876 |
0.362 |