Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | H5023_RS05975 | Genome accession | NZ_CP060005 |
| Coordinates | 1285468..1286340 (-) | Length | 290 a.a. |
| NCBI ID | WP_016562340.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain WK190 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1280468..1291340
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5023_RS05930 (H5023_05925) | - | 1281329..1281499 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| H5023_RS05935 (H5023_05930) | - | 1281525..1281974 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| H5023_RS05940 (H5023_05935) | - | 1281971..1282600 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| H5023_RS05945 (H5023_05940) | - | 1282733..1283158 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| H5023_RS05950 (H5023_05945) | - | 1283155..1283625 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| H5023_RS05955 (H5023_05950) | - | 1283622..1284311 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| H5023_RS05960 (H5023_05955) | - | 1284417..1284626 (+) | 210 | WP_003120946.1 | hypothetical protein | - |
| H5023_RS05965 (H5023_05960) | yacG | 1284663..1284863 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| H5023_RS05970 (H5023_05965) | coaE | 1284860..1285471 (-) | 612 | WP_033982615.1 | dephospho-CoA kinase | - |
| H5023_RS05975 (H5023_05970) | pilD | 1285468..1286340 (-) | 873 | WP_016562340.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| H5023_RS05980 (H5023_05975) | pilC | 1286343..1287560 (-) | 1218 | WP_003116250.1 | type II secretion system F family protein | Machinery gene |
| H5023_RS05985 (H5023_05980) | pilB | 1287564..1289267 (-) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| H5023_RS05990 (H5023_05985) | pilE | 1289496..1290035 (+) | 540 | WP_003116248.1 | pilin | Machinery gene |
| H5023_RS05995 (H5023_05990) | - | 1290099..1290797 (+) | 699 | WP_023122772.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31843.83 Da Isoelectric Point: 7.3454
>NTDB_id=412395 H5023_RS05975 WP_016562340.1 1285468..1286340(-) (pilD) [Pseudomonas aeruginosa strain WK190]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=412395 H5023_RS05975 WP_016562340.1 1285468..1286340(-) (pilD) [Pseudomonas aeruginosa strain WK190]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTACTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTACTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |