Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H4991_RS06650 Genome accession   NZ_CP059968
Coordinates   1272821..1273369 (-) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C197     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1267821..1278369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4991_RS06620 (H4991_06620) ctsT 1267871..1268173 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  H4991_RS06625 (H4991_06625) proC 1268170..1268901 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  H4991_RS06630 (H4991_06630) fliW 1268901..1269290 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  H4991_RS06635 (H4991_06635) - 1269451..1270098 (+) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  H4991_RS06640 (H4991_06640) lon 1270115..1272490 (+) 2376 WP_002853487.1 endopeptidase La -
  H4991_RS06645 (H4991_06645) rpsR 1272550..1272810 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  H4991_RS06650 (H4991_06650) ssb 1272821..1273369 (-) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  H4991_RS06655 (H4991_06655) rpsF 1273378..1273755 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  H4991_RS06660 (H4991_06660) - 1273842..1274708 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  H4991_RS06665 (H4991_06665) rseP 1274701..1275807 (-) 1107 WP_002934663.1 RIP metalloprotease RseP -
  H4991_RS06670 (H4991_06670) pgsA 1275804..1276340 (-) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H4991_RS06675 (H4991_06675) rdxA 1276465..1277070 (-) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  H4991_RS06680 (H4991_06680) - 1277070..1277690 (-) 621 WP_057044061.1 nitroreductase family protein -
  H4991_RS06685 (H4991_06685) - 1277754..1278179 (-) 426 WP_032580822.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=411971 H4991_RS06650 WP_002860190.1 1272821..1273369(-) (ssb) [Campylobacter jejuni strain C197]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=411971 H4991_RS06650 WP_002860190.1 1272821..1273369(-) (ssb) [Campylobacter jejuni strain C197]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363