Detailed information NTG0411928

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N015_RS22320
• Genome accession: NZ_CP047265
• Coordinates: 5012552..5013424 (+)
• Length: 290 a.a.
• NCBI ID: WP_024684956.1
• Uniprot ID: -
• Organism: Pseudomonas asturiensis strain CC1524
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5007552..5018424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N015_RS22295 (N015_22295)	-	5008269..5008814 (+)	546	WP_024684952.1	DUF1523 family protein	-
N015_RS22305 (N015_22305)	-	5008987..5009409 (-)	423	WP_024684953.1	pilin	-
N015_RS22310 (N015_22310)	pilB	5009636..5011330 (+)	1695	WP_024684954.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N015_RS22315 (N015_22315)	pilC	5011333..5012550 (+)	1218	WP_024684955.1	type II secretion system F family protein	Machinery gene
N015_RS22320 (N015_22320)	pilD	5012552..5013424 (+)	873	WP_024684956.1	prepilin peptidase	Machinery gene
N015_RS22325 (N015_22325)	coaE	5013421..5014044 (+)	624	WP_024684957.1	dephospho-CoA kinase	-
N015_RS22330 (N015_22330)	yacG	5014041..5014250 (+)	210	WP_024684958.1	DNA gyrase inhibitor YacG	-
N015_RS22335 (N015_22335)	-	5014494..5014955 (-)	462	WP_024685627.1	hypothetical protein	-
N015_RS22340 (N015_22340)	-	5015081..5015710 (+)	630	WP_024685626.1	DUF1780 domain-containing protein	-
N015_RS22345 (N015_22345)	-	5015707..5016240 (+)	534	WP_024685625.1	MOSC domain-containing protein	-
N015_RS22350 (N015_22350)	-	5016261..5016434 (+)	174	WP_032622578.1	DUF3094 family protein	-
N015_RS22355 (N015_22355)	-	5016498..5017796 (+)	1299	WP_024685624.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31892.02 Da
• Isoelectric Point: 7.6342

>NTDB_id=411928 N015_RS22320 WP_024684956.1 5012552..5013424(+) (pilD) [Pseudomonas asturiensis strain CC1524]
MPLLDFLASSMLAFVIFSGVLGLLVGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPEQSPFNLILPHSSCPHCAHRIR
PWENVPVISYLLLRGKCSQCKSAISLRYPLVELACALLSAYVAWNFGFGWQAAAMLVLSWGLLAMSLIDADTQLLPDSLV
LPLMWLGLIVNTFGLFTSLSDALWGAVAGYLALWSVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVILMRMRNVESGTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=411928 N015_RS22320 WP_024684956.1 5012552..5013424(+) (pilD) [Pseudomonas asturiensis strain CC1524]
ATGCCCCTTCTCGATTTCCTGGCCAGCTCGATGCTGGCCTTTGTTATTTTCAGTGGCGTGCTTGGCCTGCTGGTCGGAAG
CTTCCTCAACGTCGTGGTGTATCGCCTGCCGAAGATGATGGAGCGTGACTGGAAAGCCCAGTCGCGGGAAATGCTGGGCT
TGCCTGCCGAGCCCGAACAGTCCCCCTTCAACCTGATTCTCCCGCACTCCAGTTGCCCGCACTGTGCCCACAGGATTCGT
CCCTGGGAGAACGTGCCGGTCATCAGCTACCTGTTGCTGCGCGGCAAGTGCTCGCAATGCAAGTCTGCGATCAGCCTGCG
CTATCCGCTGGTCGAACTGGCCTGCGCGCTGCTGTCGGCCTACGTCGCCTGGAATTTCGGCTTTGGCTGGCAAGCGGCGG
CGATGCTGGTGTTGAGTTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGACACGCAATTGCTGCCGGACTCACTGGTG
CTGCCCCTGATGTGGCTGGGGCTGATCGTGAACACATTCGGCCTCTTCACCTCATTGAGTGACGCGCTGTGGGGCGCGGT
GGCCGGTTACCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGTTGATCACCGGCAAGGAAGGTATGGGCTATGGCGACT
TCAAGTTGCTGGCGATGCTCGGGGCGTGGGGCGGCTGGCAGATTCTGCCGCTGACCATTCTGCTGTCCTCGCTGGTGGGC
GCCGTTCTGGGCGTTATCCTGATGCGCATGCGCAATGTTGAATCTGGTACGCCAATCCCCTTCGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	94.828	0.521
pilD	Acinetobacter baumannii D1279779	52.465	97.931	0.514
pilD	Acinetobacter nosocomialis M2	51.761	97.931	0.507
pilD	Vibrio campbellii strain DS40M4	53.48	94.138	0.503
pilD	Neisseria gonorrhoeae MS11	51.938	88.966	0.462