Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N015_RS08670 Genome accession   NZ_CP047265
Coordinates   1931128..1931844 (+) Length   238 a.a.
NCBI ID   WP_080265964.1    Uniprot ID   -
Organism   Pseudomonas asturiensis strain CC1524     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1926128..1936844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N015_RS08650 (N015_08650) - 1926205..1926828 (+) 624 WP_024685242.1 glutathione S-transferase -
  N015_RS08655 (N015_08655) - 1927016..1927948 (+) 933 WP_024685241.1 ABC transporter ATP-binding protein -
  N015_RS08660 (N015_08660) - 1927945..1928733 (+) 789 WP_024685240.1 ABC transporter permease -
  N015_RS08665 (N015_08665) comA 1928869..1931085 (+) 2217 WP_024685239.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N015_RS08670 (N015_08670) exbB 1931128..1931844 (+) 717 WP_080265964.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N015_RS08675 (N015_08675) - 1931841..1932272 (+) 432 WP_024685237.1 ExbD/TolR family protein -
  N015_RS08680 (N015_08680) lpxK 1932272..1933267 (+) 996 WP_024685236.1 tetraacyldisaccharide 4'-kinase -
  N015_RS08685 (N015_08685) - 1933285..1933470 (+) 186 WP_024685235.1 Trm112 family protein -
  N015_RS08690 (N015_08690) kdsB 1933467..1934231 (+) 765 WP_024685234.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N015_RS08695 (N015_08695) murB 1934266..1935285 (+) 1020 WP_024685233.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25815.33 Da        Isoelectric Point: 8.5304

>NTDB_id=411921 N015_RS08670 WP_080265964.1 1931128..1931844(+) (exbB) [Pseudomonas asturiensis strain CC1524]
MVEWRQFFKGVVTVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEHKLDNDKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDARVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=411921 N015_RS08670 WP_080265964.1 1931128..1931844(+) (exbB) [Pseudomonas asturiensis strain CC1524]
ATGGTAGAGTGGCGCCAATTTTTCAAGGGAGTGGTCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCC
GATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCATCGAGCGTCTCTGGACGCTGCGCGCCAGCCGTATCACGCCGC
CGCACCTGCTGGGGCAGGTCTGGCAGTGGATTCAGGAACATAAGCTCGATAACGACAAGCTCAAGCAACTGCGCGCCGAT
TCGCCTTTGGGTGAAATCCTCGCGGCGGGCCTTGCCAACTCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCACGATCTGGAACGTTATCTGAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGTTGTTGG
GGCTGCTGGGCACCGTGTTGGGGATGATCGACATCTTCGGGTCTTTCAATAGCTCGGGTGCGACCGCCAATGCCGGTGTG
CTGGCCGGCGGTATTTCCAAGGCGCTGATCTGTACCGCCTCTGGCCTTATCGTTGCGATTCCGGCCATCTTCTTTCACCG
TTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTTGTCGAGGTGGTGCAGGGTG
ACCGGGATGTCGATCTGATCGACGCCCGGGTTGACCTCAAATCCCTGGCCAAGGCGGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.583

86.555

0.697

Multiple sequence alignment