Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N015_RS08665 Genome accession   NZ_CP047265
Coordinates   1928869..1931085 (+) Length   738 a.a.
NCBI ID   WP_024685239.1    Uniprot ID   -
Organism   Pseudomonas asturiensis strain CC1524     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1923869..1936085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N015_RS08650 (N015_08650) - 1926205..1926828 (+) 624 WP_024685242.1 glutathione S-transferase -
  N015_RS08655 (N015_08655) - 1927016..1927948 (+) 933 WP_024685241.1 ABC transporter ATP-binding protein -
  N015_RS08660 (N015_08660) - 1927945..1928733 (+) 789 WP_024685240.1 ABC transporter permease -
  N015_RS08665 (N015_08665) comA 1928869..1931085 (+) 2217 WP_024685239.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N015_RS08670 (N015_08670) exbB 1931128..1931844 (+) 717 WP_080265964.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N015_RS08675 (N015_08675) - 1931841..1932272 (+) 432 WP_024685237.1 ExbD/TolR family protein -
  N015_RS08680 (N015_08680) lpxK 1932272..1933267 (+) 996 WP_024685236.1 tetraacyldisaccharide 4'-kinase -
  N015_RS08685 (N015_08685) - 1933285..1933470 (+) 186 WP_024685235.1 Trm112 family protein -
  N015_RS08690 (N015_08690) kdsB 1933467..1934231 (+) 765 WP_024685234.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N015_RS08695 (N015_08695) murB 1934266..1935285 (+) 1020 WP_024685233.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80165.50 Da        Isoelectric Point: 10.2431

>NTDB_id=411920 N015_RS08665 WP_024685239.1 1928869..1931085(+) (comA) [Pseudomonas asturiensis strain CC1524]
MRTGMIALALGLLALRFLPALPATWLLLLMPVVALMLLPFRTYPLAFFLFGFTWACVSAQSALNDRLLPRLDGQTLWLQG
KVVGLPSASEGVVRFELAEGLSRRAKLPKLMRIAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSIDWQVLQDTGTVHLLVISGQHVSLLAGVMYAL
VSLLVRWGLWPRALPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGLLWPLLLSLNAVLVFEPL
VSLRPGFWLSFAAVGILILIFSGRLGAWGWIQSWTRAQWLIAVGLLPILMMLNLPISISGPLANLVAVPWVSVIVLPLAL
SGTLLLPVPLLGESLLWVAGGALEWLFVFLGWMADQVPAWLPSATPAWVLALSLLGALLVLLPKGVPIRPLGWPLLLLCV
FAPLKPVPAGQVDVLQLDVGQGLAILLRTRHHTLLYDAGPRFGEFDIGQRVVLPAIRKSGVRHLDMMLLSHADADHAGGA
LAVHRALSVGRVLGGDIARLAPALGASRCENGESWEWDGVVFSTWVWEQAPEGNAGSCMLSVDANGERLLLTGDVDTEAE
QAAINSGFDLRAHWLQAPHHGSRSSSSKPFLRAVMPTGVLISRGRNNAFGHPHPLVMARYKWFGSASYDSAELGAIRLQL
GTFGSPEAQRAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=411920 N015_RS08665 WP_024685239.1 1928869..1931085(+) (comA) [Pseudomonas asturiensis strain CC1524]
ATGCGCACAGGGATGATCGCGCTGGCTTTGGGCCTGTTGGCCTTGCGTTTTCTGCCTGCCTTGCCTGCCACCTGGCTGTT
ACTGCTGATGCCCGTCGTGGCGTTGATGCTGCTGCCGTTTCGCACCTACCCGTTGGCTTTCTTTCTGTTCGGATTCACCT
GGGCTTGCGTCTCGGCGCAGTCGGCGCTGAATGATCGCTTGTTGCCCCGTCTCGACGGACAAACGCTGTGGCTGCAGGGC
AAAGTGGTCGGGCTGCCGAGCGCGTCTGAAGGTGTGGTGCGTTTCGAACTGGCAGAAGGTCTGTCACGTCGTGCGAAGCT
GCCCAAACTGATGCGCATTGCCTGGTATGGCGGCCCCGAGGTGCGCAGTGGCGAGCGTTGGCGGCTGGCAGTAAAACTCA
AGCGGCCGGGCGGGCTGGTCAATCCTGATGCGTTCGATTATGAAGCCTGGCTGCTGGCTCAGCGTATCGGGGCGACCGGC
ACGGTCGTGGACGGTCAGTTGCTGGCGCCGGCTCGTGCCGCCTGGCGTGATGCCATACGCCAGCGCTTGCTGGCCGTTGA
TGCACAGGGGCGAGAAGGGGGGCTGGCGGCGCTGGTTCTGGGTGACGGCTCCGGGCTGTCAAGCATCGACTGGCAGGTGC
TGCAGGATACCGGCACCGTGCACCTGTTGGTGATCTCCGGTCAGCACGTCAGCTTACTGGCCGGGGTGATGTATGCGCTG
GTGAGTCTGCTGGTACGTTGGGGGCTGTGGCCGCGCGCGCTGCCCTGGTTGCCGTGGGCCTGTGGTCTGGCATTCGCTTC
GGCGCTTGGTTATGGACTGCTGGCCGGCTTCGATGTGCCGGTACGGCGTGCCTGCGTGATGGTGGGTCTGGTGTTGTTGT
GGCGCTTGCGCTTTCGGCATTTGGGCCTGCTTTGGCCGCTGTTGCTGTCGCTCAACGCGGTGCTGGTTTTTGAGCCCTTG
GTGAGTCTGCGTCCCGGTTTCTGGCTATCGTTTGCGGCAGTGGGGATTCTGATTCTTATCTTCAGTGGTCGCCTTGGCGC
CTGGGGCTGGATTCAGAGCTGGACGCGAGCCCAGTGGCTGATTGCCGTGGGCCTGCTTCCAATCCTGATGATGTTGAACC
TGCCGATCAGTATCAGCGGTCCGCTCGCCAACCTGGTCGCGGTGCCATGGGTCAGTGTGATCGTTCTGCCTCTGGCACTG
AGCGGCACCCTGTTGCTGCCTGTTCCATTGCTGGGCGAAAGCCTTTTGTGGGTGGCCGGTGGAGCGCTGGAGTGGCTGTT
CGTGTTTTTGGGCTGGATGGCTGATCAGGTGCCTGCGTGGCTGCCCAGCGCAACGCCCGCCTGGGTGCTGGCACTGAGTC
TGCTCGGTGCTTTGCTGGTCTTGTTGCCCAAGGGCGTGCCAATCAGGCCGCTGGGCTGGCCGCTTCTCTTGTTATGTGTA
TTTGCACCGCTCAAGCCGGTGCCCGCCGGGCAGGTCGATGTCCTGCAACTGGATGTCGGTCAGGGTCTGGCAATACTGCT
TCGCACGCGTCATCACACCTTGCTTTACGACGCCGGGCCGCGTTTTGGCGAGTTCGATATCGGCCAGCGGGTGGTTTTGC
CTGCCATCCGCAAGAGCGGGGTACGGCATCTGGACATGATGCTGCTCAGTCATGCAGACGCGGACCATGCCGGCGGCGCG
TTGGCTGTCCACAGGGCATTGTCGGTCGGGCGTGTGCTCGGGGGGGACATTGCCCGGCTTGCGCCTGCACTCGGTGCCAG
TCGATGCGAAAACGGTGAGAGTTGGGAATGGGATGGTGTGGTCTTTTCAACCTGGGTCTGGGAGCAGGCACCCGAAGGCA
ACGCGGGGTCCTGCATGCTGAGTGTCGACGCCAATGGTGAGCGATTGTTGTTGACCGGCGACGTTGATACCGAAGCCGAA
CAGGCGGCTATCAACAGCGGGTTCGATCTGCGCGCGCACTGGTTGCAGGCGCCGCATCATGGCAGCCGAAGCTCGTCTTC
CAAGCCGTTTTTGAGGGCTGTCATGCCAACCGGCGTCCTGATCTCGCGCGGGCGCAACAACGCGTTCGGCCACCCGCACC
CGCTCGTCATGGCGCGTTATAAATGGTTTGGCAGTGCCAGCTACGACAGCGCCGAGCTGGGCGCAATCCGGCTGCAACTG
GGAACATTCGGCTCGCCTGAGGCACAACGTGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-673)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.592

97.019

0.598
  comA Ralstonia pseudosolanacearum GMI1000

32.033

100

0.367

Multiple sequence alignment